nameassignment.cpp

   1
   2
   3 #include "nameassignment.hpp"
   4
   5 //**********************************************************************************************************************
   6
   7 NameAssignment::NameAssignment(string nameMapFile){
   8
   9         openInputFile(nameMapFile, fileHandle);
  10
  11 }
  12
  13 //**********************************************************************************************************************
  14
  15 void NameAssignment::readMap(){
  16         try{
  17                 string firstCol, secondCol, skip;
  18         //      int index = 0;
  19
  20
  21 //              map<string, string> data;
  22                 int rowIndex = 0;
  23
  24                 while(fileHandle){
  25                         fileHandle >> firstCol;                         //read from first column
  26                         fileHandle >> secondCol;                        //read from second column
  27
  28 //                      data[firstCol] = secondCol;                     //store data in map
  29
  30                         list.push_back(secondCol);              //adds data's value to list
  31                         (*this)[firstCol] = rowIndex++;
  32                         gobble(fileHandle);
  33                 }
  34                 fileHandle.close();
  35
  36         }
  37         catch(exception& e) {
  38                 errorOut(e, "NameAssignment", "readMap");
  39                 exit(1);
  40         }
  41 }
  42
  43 //**********************************************************************************************************************
  44
  45 ListVector NameAssignment::getListVector(void){
  46
  47         return list;
  48
  49 }
  50
  51 //**********************************************************************************************************************
  52
  53 void NameAssignment::print(void){
  54         try {
  55                 map<string,int>::iterator it = (*this).begin();
  56                 for(it;it!=(*this).end();it++){
  57                         mothurOut(it->first + "\t" + toString(it->second)); mothurOutEndLine();  //prints out keys and values of the map this.
  58                 }
  59         }
  60         catch(exception& e) {
  61                 errorOut(e, "NameAssignment", "print");
  62                 exit(1);
  63         }
  64 }
  65
  66 //**********************************************************************************************************************
  67
  68 int NameAssignment::get(string key){
  69
  70         return  (*this)[key];
  71
  72 }
  73
  74 //**********************************************************************************************************************
  75