nameassignment.cpp

   1
   2
   3 #include "nameassignment.hpp"
   4
   5 //**********************************************************************************************************************
   6
   7 NameAssignment::NameAssignment(string nameMapFile){
   8         m = MothurOut::getInstance();
   9         openInputFile(nameMapFile, fileHandle);
  10
  11 }
  12
  13 //**********************************************************************************************************************
  14
  15 void NameAssignment::readMap(){
  16         try{
  17                 string firstCol, secondCol, skip;
  18         //      int index = 0;
  19
  20
  21                 map<string, int>::iterator itData;
  22                 int rowIndex = 0;
  23
  24                 while(fileHandle){
  25                         fileHandle >> firstCol;                         //read from first column
  26                         fileHandle >> secondCol;                        //read from second column
  27
  28                         itData = (*this).find(firstCol);
  29                         if (itData == (*this).end()) {
  30
  31                                 (*this)[firstCol] = rowIndex++;
  32                                 list.push_back(secondCol);              //adds data's value to list
  33                                 reverse[rowIndex] = firstCol;
  34
  35                         }else{  m->mothurOut(firstCol + " is already in namesfile. I will use first definition."); m->mothurOutEndLine();  }
  36
  37                         gobble(fileHandle);
  38                 }
  39                 fileHandle.close();
  40
  41         }
  42         catch(exception& e) {
  43                 m->errorOut(e, "NameAssignment", "readMap");
  44                 exit(1);
  45         }
  46 }
  47 //**********************************************************************************************************************
  48 void NameAssignment::push_back(string name) {
  49         try{
  50
  51                 int num = (*this).size();
  52                 (*this)[name] = num;
  53                 reverse[num] = name;
  54
  55                 list.push_back(name);
  56         }
  57         catch(exception& e) {
  58                 m->errorOut(e, "NameAssignment", "push_back");
  59                 exit(1);
  60         }
  61 }
  62
  63 //**********************************************************************************************************************
  64
  65 ListVector NameAssignment::getListVector(void){
  66
  67         return list;
  68
  69 }
  70
  71 //**********************************************************************************************************************
  72
  73 void NameAssignment::print(ostream& out){
  74         try {
  75                 map<string,int>::iterator it;
  76 //cout << (*this).size() << endl;
  77                 for(it = (*this).begin(); it!=(*this).end(); it++){
  78                         out << it->first << '\t' <<  it->second << endl;  //prints out keys and values of the map this.
  79                 }
  80         }
  81         catch(exception& e) {
  82                 m->errorOut(e, "NameAssignment", "print");
  83                 exit(1);
  84         }
  85 }
  86
  87 //**********************************************************************************************************************
  88
  89 int NameAssignment::get(string key){
  90         try {
  91                 map<string, int>::iterator itGet = (*this).find(key);
  92
  93                 //if you can't find it
  94                 if (itGet == (*this).end()) { return -1; }
  95
  96                 return  (*this)[key];
  97         }
  98         catch(exception& e) {
  99                 m->errorOut(e, "NameAssignment", "get");
 100                 exit(1);
 101         }
 102 }
 103 //**********************************************************************************************************************
 104
 105 string NameAssignment::get(int key){
 106         try {
 107
 108                 map<int, string>::iterator itGet = reverse.find(key);
 109
 110                 if (itGet == reverse.end()) { return "not found"; }
 111
 112                 return  reverse[key];
 113
 114         }
 115         catch(exception& e) {
 116                 m->errorOut(e, "NameAssignment", "get");
 117                 exit(1);
 118         }
 119 }
 120 //**********************************************************************************************************************
 121