mothurout.cpp

   1 /*
   2  *  m->mothurOut.cpp
   3  *  Mothur
   4  *
   5  *  Created by westcott on 2/25/10.
   6  *  Copyright 2010 Schloss Lab. All rights reserved.
   7  *
   8  */
   9
  10 #include "mothurout.h"
  11
  12 /******************************************************/
  13 MothurOut* MothurOut::getInstance() {
  14         if( _uniqueInstance == 0) {
  15                 _uniqueInstance = new MothurOut();
  16         }
  17         return _uniqueInstance;
  18 }
  19 /*********************************************************************************************/
  20 void MothurOut::setFileName(string filename)  {
  21         try {
  22                 logFileName = filename;
  23
  24                 #ifdef USE_MPI
  25                         int pid;
  26                         MPI_Comm_rank(MPI_COMM_WORLD, &pid);
  27
  28                         if (pid == 0) { //only one process should output to screen
  29                 #endif
  30
  31                 openOutputFile(filename, out);
  32
  33                 #ifdef USE_MPI
  34                         }
  35                 #endif
  36         }
  37         catch(exception& e) {
  38                 errorOut(e, "MothurOut", "setFileName");
  39                 exit(1);
  40         }
  41 }
  42 /*********************************************************************************************/
  43 MothurOut::~MothurOut() {
  44         try {
  45                 _uniqueInstance = 0;
  46
  47                 #ifdef USE_MPI
  48                         int pid;
  49                         MPI_Comm_rank(MPI_COMM_WORLD, &pid);
  50
  51                         if (pid == 0) { //only one process should output to screen
  52                 #endif
  53
  54                 out.close();
  55
  56                 #ifdef USE_MPI
  57                         }
  58                 #endif
  59         }
  60         catch(exception& e) {
  61                 errorOut(e, "MothurOut", "MothurOut");
  62                 exit(1);
  63         }
  64 }
  65
  66 /*********************************************************************************************/
  67 void MothurOut::mothurOut(string output) {
  68         try {
  69
  70                 #ifdef USE_MPI
  71                         int pid;
  72                         MPI_Comm_rank(MPI_COMM_WORLD, &pid);
  73
  74                         if (pid == 0) { //only one process should output to screen
  75                 #endif
  76
  77                 cout << output;
  78                 out << output;
  79
  80                 #ifdef USE_MPI
  81                         }
  82                 #endif
  83         }
  84         catch(exception& e) {
  85                 errorOut(e, "MothurOut", "MothurOut");
  86                 exit(1);
  87         }
  88 }
  89 /*********************************************************************************************/
  90 void MothurOut::mothurOutEndLine() {
  91         try {
  92                 #ifdef USE_MPI
  93                         int pid;
  94                         MPI_Comm_rank(MPI_COMM_WORLD, &pid);
  95
  96                         if (pid == 0) { //only one process should output to screen
  97                 #endif
  98
  99                 cout << endl;
 100                 out << endl;
 101
 102                 #ifdef USE_MPI
 103                         }
 104                 #endif
 105         }
 106         catch(exception& e) {
 107                 errorOut(e, "MothurOut", "MothurOutEndLine");
 108                 exit(1);
 109         }
 110 }
 111 /*********************************************************************************************/
 112 void MothurOut::mothurOutJustToLog(string output) {
 113         try {
 114                 #ifdef USE_MPI
 115                         int pid;
 116                         MPI_Comm_rank(MPI_COMM_WORLD, &pid);
 117
 118                         if (pid == 0) { //only one process should output to screen
 119                 #endif
 120
 121                 out << output;
 122
 123                 #ifdef USE_MPI
 124                         }
 125                 #endif
 126         }
 127         catch(exception& e) {
 128                 errorOut(e, "MothurOut", "MothurOutJustToLog");
 129                 exit(1);
 130         }
 131 }
 132 /*********************************************************************************************/
 133 void MothurOut::errorOut(exception& e, string object, string function) {
 134         mothurOut("Error: ");
 135         mothurOut(toString(e.what()));
 136         mothurOut(" has occurred in the " + object + " class function " + function + ". Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry.");
 137         mothurOutEndLine();
 138 }
 139 /*********************************************************************************************/
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