mothur.cpp

   1 /*
   2  *  interface.cpp
   3  *
   4  *
   5  *  Created by Pat Schloss on 8/14/08.
   6  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
   7  *
   8  */
   9
  10 #include "mothur.h"
  11 #include "engine.hpp"
  12 #include "globaldata.hpp"
  13
  14 /**************************************************************************************************/
  15
  16 GlobalData* GlobalData::_uniqueInstance = 0;
  17
  18 int main(int argc, char *argv[]){
  19         try {
  20                 //srand(54321);
  21                 srand( (unsigned)time( NULL ) );
  22
  23                 Engine* mothur;
  24                 bool bail = 0;
  25                 string input;
  26
  27                 if(argc>1){
  28                         input = argv[1];
  29
  30                         if (input[0] == '#') {
  31                                 mothur = new ScriptEngine(argv[0], argv[1]);
  32                         }else{
  33                                 mothur = new BatchEngine(argv[0], argv[1]);
  34                         }
  35                 }
  36                 else{
  37                         mothur = new InteractEngine(argv[0]);
  38                 }
  39
  40                 while(bail == 0)                {       bail = mothur->getInput();                      }
  41
  42                 delete mothur;
  43
  44                 return 0;
  45         }
  46         catch(exception& e) {
  47                 errorOut(e, "mothur", "main");
  48                 exit(1);
  49         }
  50 }
  51
  52 /**************************************************************************************************/
  53