mergefilecommand.h

   1 #ifndef MERGEFILECOMMAND_H
   2 #define MERGEFILECOMMAND_H
   3
   4 /*
   5  *  mergefilecommand.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 6/14/09.
   9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "command.hpp"
  15
  16 class MergeFileCommand : public Command {
  17 public:
  18         MergeFileCommand(string);
  19         MergeFileCommand();
  20         ~MergeFileCommand(){}
  21
  22         vector<string> setParameters();
  23         string getCommandName()                 { return "merge.files"; }
  24         string getCommandCategory()             { return "General";             }
  25         string getHelpString();
  26         string getCitation() { return "http://www.mothur.org/wiki/Merge.files"; }
  27         string getDescription()         { return "appends files creating one file"; }
  28
  29
  30         int execute();
  31         void help() { m->mothurOut(getHelpString()); }
  32
  33 private:
  34         vector<string> fileNames, outputNames;
  35         string outputFileName;
  36         int numInputFiles;
  37         bool abort;
  38 };
  39
  40 #endif