1 #ifndef MANTELCOMMAND_H
2 #define MANTELCOMMAND_H
8 * Created by westcott on 2/9/11.
9 * Copyright 2011 Schloss Lab. All rights reserved.
13 #include "command.hpp"
14 #include "linearalgebra.h"
16 class MantelCommand : public Command {
18 MantelCommand(string);
22 vector<string> setParameters();
23 string getCommandName() { return "mantel"; }
24 string getCommandCategory() { return "Hypothesis Testing"; }
25 string getHelpString();
26 string getCitation() { return "Sokal, R. R., & Rohlf, F. J. (1995). Biometry, 3rd edn. New York: Freeman. http://www.mothur.org/wiki/Mantel"; }
29 void help() { m->mothurOut(getHelpString()); }
33 string phylipfile1, phylipfile2, outputDir, method;
37 vector<string> outputNames;