mantelcommand.h

   1 #ifndef MANTELCOMMAND_H
   2 #define MANTELCOMMAND_H
   3
   4 /*
   5  *  mantelcommand.h
   6  *  mothur
   7  *
   8  *  Created by westcott on 2/9/11.
   9  *  Copyright 2011 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14 #include "linearalgebra.h"
  15
  16 class MantelCommand : public Command {
  17 public:
  18         MantelCommand(string);
  19         MantelCommand();
  20         ~MantelCommand(){}
  21
  22         vector<string> setParameters();
  23         string getCommandName()                 { return "mantel";                                      }
  24         string getCommandCategory()             { return "Hypothesis Testing";          }
  25         string getHelpString();
  26
  27         int execute();
  28         void help() { m->mothurOut(getHelpString()); }
  29
  30 private:
  31
  32         string phylipfile1, phylipfile2, outputDir, method;
  33         bool abort;
  34         int iters;
  35
  36         vector<string> outputNames;
  37 };
  38
  39
  40 #endif
  41
  42
  43