inputdata.h

   1 #ifndef INPUTDATA_H
   2 #define INPUTDATA_H
   3
   4 #include "mothur.h"
   5 #include "ordervector.hpp"
   6 #include "sharedlistvector.h"
   7 #include "sharedordervector.h"
   8 #include "listvector.hpp"
   9
  10
  11 using namespace std;
  12
  13 class InputData {
  14
  15 public:
  16         InputData(string, string);
  17         InputData(string, string, string);
  18         ~InputData();
  19         ListVector* getListVector();
  20         SharedListVector* getSharedListVector();
  21         OrderVector* getOrderVector();
  22         SharedOrderVector* getSharedOrderVector();
  23         SAbundVector* getSAbundVector();
  24         RAbundVector* getRAbundVector();
  25         vector<SharedRAbundVector*> getSharedRAbundVectors();
  26
  27 private:
  28         string format;
  29         ifstream fileHandle;
  30         DataVector* input;
  31         ListVector* list;
  32         SharedListVector* SharedList;
  33         OrderVector* output;
  34         SharedOrderVector* SharedOrder;
  35         SAbundVector* sabund;
  36         RAbundVector* rabund;
  37         map<string,int> orderMap;
  38 };
  39
  40
  41 #endif