inputdata.h

   1 #ifndef INPUTDATA_H
   2 #define INPUTDATA_H
   3
   4 #include "mothur.h"
   5 #include "ordervector.hpp"
   6 #include "sharedlistvector.h"
   7 #include "sharedordervector.h"
   8 #include "listvector.hpp"
   9
  10
  11 class InputData {
  12
  13 public:
  14         InputData(string, string);
  15         InputData(string, string, string);
  16         ~InputData();
  17         ListVector* getListVector();
  18         SharedListVector* getSharedListVector();
  19         OrderVector* getOrderVector();
  20         SharedOrderVector* getSharedOrderVector();
  21         SAbundVector* getSAbundVector();
  22         RAbundVector* getRAbundVector();
  23         vector<SharedRAbundVector*> getSharedRAbundVectors();
  24
  25 private:
  26         string format;
  27         ifstream fileHandle;
  28         DataVector* input;
  29         ListVector* list;
  30         SharedListVector* SharedList;
  31         OrderVector* output;
  32         SharedOrderVector* SharedOrder;
  33         SAbundVector* sabund;
  34         RAbundVector* rabund;
  35         map<string,int> orderMap;
  36 };
  37
  38
  39 #endif