inputdata.h

   1 #ifndef INPUTDATA_H
   2 #define INPUTDATA_H
   3
   4 #include "mothur.h"
   5 #include "ordervector.hpp"
   6 #include "sharedlistvector.h"
   7 #include "sharedordervector.h"
   8 #include "listvector.hpp"
   9
  10
  11 class InputData {
  12
  13 public:
  14         InputData(string, string);
  15         InputData(string, string, string);
  16         ~InputData();
  17         ListVector* getListVector();
  18         ListVector* getListVector(string);  //pass the label you want
  19         ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
  20         SharedListVector* getSharedListVector();
  21         SharedListVector* getSharedListVector(string);  //pass the label you want
  22         OrderVector* getOrderVector();
  23         OrderVector* getOrderVector(string); //pass the label you want
  24         SharedOrderVector* getSharedOrderVector();
  25         SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
  26         SAbundVector* getSAbundVector();
  27         SAbundVector* getSAbundVector(string);  //pass the label you want
  28         RAbundVector* getRAbundVector();
  29         RAbundVector* getRAbundVector(string);  //pass the label you want
  30         vector<SharedRAbundVector*> getSharedRAbundVectors();
  31         vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
  32
  33 private:
  34         string format;
  35         ifstream fileHandle;
  36         DataVector* input;
  37         ListVector* list;
  38         SharedListVector* SharedList;
  39         OrderVector* output;
  40         SharedOrderVector* SharedOrder;
  41         SAbundVector* sabund;
  42         RAbundVector* rabund;
  43         map<string,int> orderMap;
  44         string filename;
  45         MothurOut* m;
  46 };
  47
  48
  49 #endif