inputdata.h

   1 #ifndef INPUTDATA_H
   2 #define INPUTDATA_H
   3
   4 #include "mothur.h"
   5 #include "ordervector.hpp"
   6 #include "sharedlistvector.h"
   7 #include "sharedordervector.h"
   8 #include "listvector.hpp"
   9 #include "sharedrabundfloatvector.h"
  10
  11
  12 class InputData {
  13
  14 public:
  15         InputData(string, string);
  16         InputData(string, string, string);
  17         ~InputData();
  18         ListVector* getListVector();
  19         ListVector* getListVector(string);  //pass the label you want
  20         ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
  21         SharedListVector* getSharedListVector();
  22         SharedListVector* getSharedListVector(string);  //pass the label you want
  23         OrderVector* getOrderVector();
  24         OrderVector* getOrderVector(string); //pass the label you want
  25         SharedOrderVector* getSharedOrderVector();
  26         SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
  27         SAbundVector* getSAbundVector();
  28         SAbundVector* getSAbundVector(string);  //pass the label you want
  29         RAbundVector* getRAbundVector();
  30         RAbundVector* getRAbundVector(string);  //pass the label you want
  31         vector<SharedRAbundVector*> getSharedRAbundVectors();
  32         vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
  33         vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
  34         vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
  35
  36 private:
  37         string format;
  38         ifstream fileHandle;
  39         DataVector* input;
  40         ListVector* list;
  41         SharedListVector* SharedList;
  42         OrderVector* output;
  43         SharedOrderVector* SharedOrder;
  44         SAbundVector* sabund;
  45         RAbundVector* rabund;
  46         map<string,int> orderMap;
  47         string filename;
  48         MothurOut* m;
  49 };
  50
  51
  52 #endif