goodscoverage.cpp

   1 /*
   2  *  goodscoverage.cpp
   3  *  Mothur
   4  *
   5  *  Created by Thomas Ryabin on 4/8/09.
   6  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   7  *
   8  */
   9
  10 #include "goodscoverage.h"
  11 #include "calculator.h"
  12
  13 /**********************************************************/
  14
  15 EstOutput GoodsCoverage::getValues(SAbundVector* rank){
  16         try {
  17                 data.resize(1,0);
  18
  19                 double numSingletons = rank->get(1);
  20                 double totalIndividuals = rank->getNumSeqs();
  21
  22                 data[0] = 1 - numSingletons/totalIndividuals;
  23
  24                 if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
  25
  26                 return data;
  27         }
  28         catch(exception& e) {
  29                 m->errorOut(e, "GoodsCoverage", "getValues");
  30                 exit(1);
  31         }
  32 }
  33
  34 /***********************************************************************/
  35