globaldata.cpp

   1
   2
   3 #include "globaldata.hpp"
   4
   5 /*******************************************************/
   6
   7 /******************************************************/
   8 GlobalData* GlobalData::getInstance() {
   9         if( _uniqueInstance == 0) {
  10                 _uniqueInstance = new GlobalData();
  11         }
  12         return _uniqueInstance;
  13 }
  14 /*******************************************************/
  15
  16 /******************************************************/
  17 // These functions give you the option parameters of the commands
  18 string GlobalData::getPhylipFile()              {       return phylipfile;              }
  19 string GlobalData::getColumnFile()              {       return columnfile;              }
  20 string GlobalData::getListFile()                {       return listfile;                }
  21 string GlobalData::getRabundFile()              {       return rabundfile;              }
  22 string GlobalData::getSabundFile()              {       return sabundfile;              }
  23 string GlobalData::getNameFile()                {       return namefile;                }
  24 string GlobalData::getGroupFile()               {       return groupfile;               }
  25 string GlobalData::getOrderFile()               {       return orderfile;               }
  26 string GlobalData::getTreeFile()                {       return treefile;                }
  27 string GlobalData::getSharedFile()              {       return sharedfile;              }
  28 //string GlobalData::getFastaFile()             {       return fastafile;               }
  29 string GlobalData::getFormat()                  {       return format;                  }
  30
  31 void GlobalData::setListFile(string file)               {       listfile = file;        inputFileName = file;                                   }
  32 //void GlobalData::setFastaFile(string file)            {       fastafile = file;       inputFileName = file;                                   }
  33 void GlobalData::setTreeFile(string file)               {       treefile = file;        inputFileName = file;                                   }
  34 void GlobalData::setRabundFile(string file)             {       rabundfile = file;      inputFileName = file;                                   }
  35 void GlobalData::setSabundFile(string file)             {       sabundfile = file;      inputFileName = file;                                   }
  36 void GlobalData::setPhylipFile(string file)             {       phylipfile = file;    inputFileName = file;                                     }
  37 void GlobalData::setColumnFile(string file)             {       columnfile = file;    inputFileName = file;                                     }
  38 void GlobalData::setGroupFile(string file)              {       groupfile = file;                                                                                       }
  39 void GlobalData::setSharedFile(string file)             {       sharedfile = file;      inputFileName = file;                                   }
  40 void GlobalData::setNameFile(string file)               {       namefile = file;                }
  41 void GlobalData::setOrderFile(string file)              {       orderfile = file;               }
  42 void GlobalData::setFormat(string Format)               {       format = Format;                }
  43
  44
  45 /*******************************************************/
  46
  47 /******************************************************/
  48 GlobalData::GlobalData() {
  49         //option definitions should go here...
  50         clear();
  51         gListVector = NULL;
  52         gSparseMatrix = NULL;
  53 }
  54 /*******************************************************/
  55
  56 /******************************************************/
  57 void GlobalData::clear() {
  58         //option definitions should go here...
  59         phylipfile              =       ""; //do we need this?
  60         columnfile              =       ""; //do we need this?
  61         listfile                =       "";
  62         rabundfile              =       "";
  63         sabundfile              =       "";
  64         namefile                =       ""; //do we need this?
  65         groupfile               =       ""; //do we need this?
  66         orderfile               =       "";
  67 //      fastafile               =   ""; //do we need this?
  68         treefile                =       "";
  69         sharedfile              =       "";
  70 }
  71
  72
  73 /*******************************************************/
  74
  75 /******************************************************/
  76 void GlobalData::newRead() {
  77         try{
  78                         clear();
  79                         gGroupmap = NULL;
  80                         gListVector = NULL;
  81                         gSparseMatrix = NULL;
  82                         gTree.clear();
  83                         Treenames.clear();
  84                         labels.clear(); lines.clear(); Groups.clear();
  85                         allLines = 1;
  86                         runParse = true;
  87         }
  88         catch(exception& e) {
  89                 cout << "Standard Error: " << e.what() << " has occurred in the GlobalData class Function newRead. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  90                 exit(1);
  91         }
  92         catch(...) {
  93                 cout << "An unknown error has occurred in the GlobalData class function newRead. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  94                 exit(1);
  95         }
  96 }
  97
  98 //******************************************************/
  99
 100 /******************************************************/
 101 GlobalData::~GlobalData() {
 102         _uniqueInstance = 0;
 103         if(gListVector != NULL)         {       delete gListVector;             }
 104         if(gSparseMatrix != NULL)       {       delete gSparseMatrix;   }
 105         if(gorder != NULL)                      {       delete gorder;          }
 106 }
 107 /*******************************************************/
 108
 109 /*******************************************************/
 110
 111