getgroupcommand.h

   1 #ifndef GETGROUPCOMMAND_H
   2 #define GETGROUPCOMMAND_H
   3
   4 /*
   5  *  getgroupcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 2/2/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14
  15 class GetgroupCommand : public Command {
  16 public:
  17         GetgroupCommand(string);
  18         GetgroupCommand();
  19         ~GetgroupCommand() {}
  20
  21         vector<string> setParameters();
  22         string getCommandName()                 { return "get.group";                           }
  23         string getCommandCategory()             { return "OTU-Based Approaches";        }
  24         string getHelpString();
  25         string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
  26         string getDescription()         { return "outputs group names"; }
  27
  28
  29         int execute();
  30         void help() { m->mothurOut(getHelpString()); }
  31
  32
  33 private:
  34
  35         string outputFile, sharedfile, outputDir;
  36         vector<string> outputNames;
  37         ofstream out;
  38         ifstream in;
  39         bool abort;
  40
  41 };
  42
  43 #endif