engine.hpp

   1 #ifndef ENGINE_HPP
   2 #define ENGINE_HPP
   3
   4 /*
   5  *  engine.hpp
   6  *
   7  *
   8  *  Created by Pat Schloss on 8/15/08.
   9  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13
  14
  15 #include "mothur.h"
  16 #include "globaldata.hpp"
  17 #include "commandoptionparser.hpp"
  18 #include "command.hpp"
  19 #include "commandfactory.hpp"
  20 #include "mothurout.h"
  21
  22 class GlobalData;
  23
  24 class Engine {
  25 public:
  26         Engine();
  27         virtual ~Engine(){}
  28         virtual bool getInput() = 0;
  29         virtual string getCommand();
  30         virtual string getOutputDir()                   {       return cFactory->getOutputDir();        }
  31         virtual string getLogFileName()                 {       return cFactory->getLogfileName();      }
  32         virtual bool getAppend()                                {       return cFactory->getAppend();           }
  33
  34         vector<string> getOptions()             {       return options;         }
  35 protected:
  36         vector<string> options;
  37         CommandFactory* cFactory;
  38         MothurOut* mout;
  39         string findMothursPath();
  40 };
  41
  42
  43
  44 class BatchEngine : public Engine {
  45 public:
  46         BatchEngine(string, string);
  47         ~BatchEngine();
  48         virtual bool getInput();
  49         int openedBatch;
  50 private:
  51         GlobalData* globaldata;
  52         ifstream inputBatchFile;
  53         string getNextCommand(ifstream&);
  54
  55 };
  56
  57
  58
  59 class InteractEngine : public Engine {
  60 public:
  61         InteractEngine(string);
  62         ~InteractEngine();
  63         virtual bool getInput();
  64 private:
  65         GlobalData* globaldata;
  66 };
  67
  68
  69 class ScriptEngine : public Engine {
  70 public:
  71         ScriptEngine(string, string);
  72         ~ScriptEngine();
  73         virtual bool getInput();
  74         int openedBatch;
  75 private:
  76         GlobalData* globaldata;
  77         string listOfCommands;
  78         string getNextCommand(string&);
  79
  80 };
  81
  82
  83 #endif