distancedb.hpp

   1 #ifndef DISTANCEDB_HPP
   2 #define DISTANCEDB_HPP
   3
   4 /*
   5  *  distancedb.hpp
   6  *
   7  *
   8  *  Created by westcott on 1/27/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "mothur.h"
  15 #include "dist.h"
  16
  17 class DistanceDB : public Database {
  18
  19 public:
  20
  21         DistanceDB();
  22         ~DistanceDB() {}
  23
  24         void generateDB() {} //doesn't generate a search db
  25         void addSequence(Sequence);
  26         vector<int> findClosestSequences(Sequence*, int);  // returns indexes of n closest sequences to query
  27
  28 private:
  29         vector<Sequence> data;
  30         Dist* distCalculator;
  31
  32         int templateSeqsLength;
  33         bool templateAligned;
  34
  35         bool isAligned(string);
  36
  37 };
  38
  39 #endif