distancedb.hpp

   1 #ifndef DISTANCEDB_HPP
   2 #define DISTANCEDB_HPP
   3
   4 /*
   5  *  distancedb.hpp
   6  *
   7  *
   8  *  Created by Pat Schloss on 12/29/08.
   9  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13
  14 using namespace std;
  15
  16 #include "mothur.h"
  17
  18 class DistanceDB : public Database {
  19
  20 public:
  21         DistanceDB(string, string);
  22         Sequence* findClosestSequence(Sequence*);
  23
  24 private:
  25
  26         struct hit{
  27                 string seqName;
  28                 int indexNumber;
  29                 float simScore;
  30         };
  31         vector<hit> mostSimSequenceVector;
  32 //      ifstream inputData;
  33         int searchIndex;
  34 };
  35
  36 #endif