distancecommand.h

   1 #ifndef DISTANCECOMMAND_H
   2 #define DISTANCECOMMAND_H
   3
   4 /*
   5  *  distancecommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 5/7/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "command.hpp"
  15 #include "globaldata.hpp"
  16 #include "validcalculator.h"
  17 #include "dist.h"
  18 #include "sequencedb.h"
  19
  20
  21 using namespace std;
  22
  23 class DistanceCommand : public Command {
  24
  25 public:
  26         DistanceCommand();
  27         ~DistanceCommand() {};
  28         int execute();
  29
  30 private:
  31         GlobalData* globaldata;
  32         ValidCalculators* validCalculator;
  33         Dist* distCalculator;
  34         SequenceDB* seqDB;
  35         ofstream out;
  36         string outputFileName;
  37         string ends, distFile;
  38         int processors;
  39         float cutoff;
  40
  41         int driver(Dist*, SequenceDB*, int, int, string, float);
  42
  43 };
  44
  45 #endif
  46
  47
  48