degapseqscommand.h

   1 #ifndef DEGAPSEQSCOMMAND_H
   2 #define DEGAPSEQSCOMMAND_H
   3
   4 /*
   5  *  degapseqscommand.h
   6  *  Mothur
   7  *
   8  *  Created by westcott on 6/21/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "command.hpp"
  15
  16 class DegapSeqsCommand : public Command {
  17 public:
  18         DegapSeqsCommand(string);
  19         ~DegapSeqsCommand();
  20         int execute();
  21         void help();
  22
  23 private:
  24
  25         bool abort;
  26         string fastafile, outputDir;
  27         vector<string> outputNames;
  28         vector<string> fastaFileNames;
  29
  30 };
  31
  32 #endif
  33