]> git.donarmstrong.com Git - mothur.git/blob - commandoptionparser.cpp
fixed some bugs
[mothur.git] / commandoptionparser.cpp
1 /*
2  *  commandoptionparser.cpp
3  *  
4  *
5  *  Created by Pat Schloss on 10/23/08.
6  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
7  *
8  */
9
10
11 #include "globaldata.hpp"
12 #include "commandoptionparser.hpp"
13
14
15 //**********************************************************************************************************************
16 //This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData
17 CommandOptionParser::CommandOptionParser(string input){
18         try {
19                 int openParen = input.find_first_of('(');
20                 int closeParen = input.find_last_of(')');
21                 string optionString = "";
22                 commandString = "";
23         
24                 if(openParen != -1 && closeParen != -1){                        
25                         commandString = input.substr(0, openParen);   //commandString contains everything before "("
26                         optionString = input.substr(openParen+1, closeParen-openParen-1); //optionString contains everything between "(" and ")".
27                 }
28                                         
29                 GlobalData* globaldata = GlobalData::getInstance();
30                 globaldata->parseGlobalData(commandString, optionString);                       //parser to separate and check options
31         }
32         catch(exception& e) {
33                 cout << "Standard Error: " << e.what() << " has occurred in the CommandOptionParser class Function CommandOptionParser. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
34                 exit(1);
35         }
36         catch(...) {
37                 cout << "An unknown error has occurred in the CommandOptionParser class function CommandOptionParser. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
38                 exit(1);
39         }
40
41 }
42
43 //**********************************************************************************************************************
44
45 string CommandOptionParser::getCommandString()  {       return commandString;   }
46
47 //**********************************************************************************************************************