commandfactory.cpp

   1 /*
   2  *  commandfactory.cpp
   3  *
   4  *
   5  *  Created by Pat Schloss on 10/25/08.
   6  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
   7  *
   8  */
   9
  10 #include "command.hpp"
  11 #include "readdistcommand.h"
  12 #include "readtreecommand.h"
  13 #include "readotucommand.h"
  14 #include "clustercommand.h"
  15 #include "parselistcommand.h"
  16 #include "collectcommand.h"
  17 #include "collectsharedcommand.h"
  18 #include "getgroupcommand.h"
  19 #include "getlabelcommand.h"
  20 #include "getlinecommand.h"
  21 #include "rarefactcommand.h"
  22 #include "summarycommand.h"
  23 #include "summarysharedcommand.h"
  24 #include "rarefactsharedcommand.h"
  25 #include "quitcommand.h"
  26 #include "helpcommand.h"
  27 #include "commandfactory.hpp"
  28 #include "deconvolutecommand.h"
  29 #include "parsimonycommand.h"
  30 #include "unifracunweightedcommand.h"
  31 #include "unifracweightedcommand.h"
  32 #include "libshuffcommand.h"
  33 #include "heatmapcommand.h"
  34 #include "venncommand.h"
  35 #include "mothur.h"
  36 #include "nocommands.h"
  37 #include "binsequencecommand.h"
  38
  39
  40 /***********************************************************/
  41
  42 /***********************************************************/
  43 CommandFactory::CommandFactory(){
  44         command = new NoCommand();
  45 }
  46 /***********************************************************/
  47
  48 /***********************************************************/
  49 CommandFactory::~CommandFactory(){
  50         delete command;
  51 }
  52
  53 /***********************************************************/
  54
  55 /***********************************************************/
  56 //This function calls the appropriate command fucntions based on user input.
  57 Command* CommandFactory::getCommand(string commandName){
  58         try {
  59                 delete command;   //delete the old command
  60
  61                          if(commandName == "read.dist")                         {       command = new ReadDistCommand();                        }
  62                 else if(commandName == "read.otu")                              {       command = new ReadOtuCommand();                         }
  63                 else if(commandName == "read.tree")                             {       command = new ReadTreeCommand();                        }
  64                 else if(commandName == "cluster")                               {       command = new ClusterCommand();                         }
  65                 else if(commandName == "deconvolute")                   {       command = new DeconvoluteCommand();                     }
  66                 else if(commandName == "parsimony")                             {       command = new ParsimonyCommand();                       }
  67                 else if(commandName == "help")                                  {       command = new HelpCommand();                            }
  68                 else if(commandName == "quit")                                  {       command = new QuitCommand();                            }
  69                 else if(commandName == "collect.single")                {       command = new CollectCommand();                         }
  70                 else if(commandName == "collect.shared")                {       command = new CollectSharedCommand();           }
  71                 else if(commandName == "rarefaction.single")    {       command = new RareFactCommand();                        }
  72                 else if(commandName == "rarefaction.shared")    {       command = new RareFactSharedCommand();          }
  73                 else if(commandName == "summary.single")                {       command = new SummaryCommand();                         }
  74                 else if(commandName == "summary.shared")                {       command = new SummarySharedCommand();           }
  75                 else if(commandName == "unifrac.weighted")              {       command = new UnifracWeightedCommand();         }
  76                 else if(commandName == "unifrac.unweighted")    {       command = new UnifracUnweightedCommand();       }
  77                 else if(commandName == "get.group")             {   command = new GetgroupCommand();                    }
  78                 else if(commandName == "get.label")             {   command = new GetlabelCommand();                    }
  79                 else if(commandName == "get.line")              {   command = new GetlineCommand();                             }
  80                 else if(commandName == "libshuff")              {   command = new LibShuffCommand();                    }
  81                 else if(commandName == "heatmap")                               {   command = new HeatMapCommand();                             }
  82                 else if(commandName == "venn")                                  {   command = new VennCommand();                                }
  83                 else if(commandName == "bin.seqs")                              {   command = new BinSeqCommand();                              }
  84                 else                                                                                    {       command = new NoCommand();                                      }
  85
  86                 return command;
  87         }
  88         catch(exception& e) {
  89                 cout << "Standard Error: " << e.what() << " has occurred in the CommandFactory class Function getCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  90                 exit(1);
  91         }
  92         catch(...) {
  93                 cout << "An unknown error has occurred in the CommandFactory class function getCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  94                 exit(1);
  95         }
  96
  97 }
  98 /***********************************************************/
  99