collect.h

   1 #ifndef COLLECT_H
   2 #define COLLECT_H
   3
   4 using namespace std;
   5
   6
   7
   8 #include "collectorscurvedata.h"
   9 #include "display.h"
  10 #include "ordervector.hpp"
  11 #include "sabundvector.hpp"
  12 #include "rabundvector.hpp"
  13 #include "sharedordervector.h"
  14 #include "datavector.hpp"
  15 #include "globaldata.hpp"
  16
  17 /***********************************************************************/
  18
  19 class Collect {
  20
  21 public:
  22         Collect(OrderVector* order, vector<Display*> disp) :
  23                                         numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  {};
  24         Collect(SharedOrderVector* sharedorder, vector<Display*> disp) :
  25                                         numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  {};
  26
  27         ~Collect(){             };
  28         void getCurve(int);
  29         void getSharedCurve(int);
  30
  31 private:
  32         SharedOrderVector* sharedorder;
  33         GlobalData* globaldata;
  34         OrderVector* order;
  35         vector<Display*> displays;
  36         int numSeqs, numGroupComb, totalNumSeq;
  37         string label, groupLabel;
  38         void getGroupComb();
  39         vector<string> groupComb;
  40         bool validGroup(vector<string>, string);
  41 };
  42
  43
  44 #endif
  45