chimeraseqscommand.cpp

   1 /*
   2  *  chimeraseqscommand.cpp
   3  *  Mothur
   4  *
   5  *  Created by Sarah Westcott on 6/29/09.
   6  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   7  *
   8  */
   9
  10 #include "chimeraseqscommand.h"
  11
  12 //**********************************************************************************************************************
  13 vector<string> ChimeraSeqsCommand::getValidParameters(){
  14         try {
  15                 vector<string> myArray;
  16                 return myArray;
  17         }
  18         catch(exception& e) {
  19                 m->errorOut(e, "ChimeraSeqsCommand", "getValidParameters");
  20                 exit(1);
  21         }
  22 }
  23 //**********************************************************************************************************************
  24 vector<string> ChimeraSeqsCommand::getRequiredParameters(){
  25         try {
  26                 vector<string> myArray;
  27                 return myArray;
  28         }
  29         catch(exception& e) {
  30                 m->errorOut(e, "ChimeraSeqsCommand", "getRequiredParameters");
  31                 exit(1);
  32         }
  33 }
  34 //**********************************************************************************************************************
  35 vector<string> ChimeraSeqsCommand::getRequiredFiles(){
  36         try {
  37                 vector<string> myArray;
  38                 return myArray;
  39         }
  40         catch(exception& e) {
  41                 m->errorOut(e, "ChimeraSeqsCommand", "getRequiredFiles");
  42                 exit(1);
  43         }
  44 }
  45 //***************************************************************************************************************
  46
  47 ChimeraSeqsCommand::ChimeraSeqsCommand(string option)  {}
  48 //**********************************************************************************************************************
  49
  50 void ChimeraSeqsCommand::help(){}
  51
  52 //***************************************************************************************************************
  53
  54 ChimeraSeqsCommand::~ChimeraSeqsCommand(){      /*      do nothing      */      }
  55
  56 //***************************************************************************************************************
  57
  58 int ChimeraSeqsCommand::execute(){
  59
  60                 m->mothurOut("The chimera.seqs command has been broken up into 5 separate commands.\n");
  61                 m->mothurOut("The chimera.bellerophon, chimera.ccode, chimera.check, chimera.pintail and chimera.slayer commands.\n");
  62
  63         return 0;
  64 }
  65 //**********************************************************************************************************************
  66
  67