chimerabellerophoncommand.h

   1 #ifndef CHIMERABELLEROPHONCOMMAND_H
   2 #define CHIMERABELLEROPHONCOMMAND_H
   3
   4 /*
   5  *  chimerabellerophoncommand.h
   6  *  Mothur
   7  *
   8  *  Created by westcott on 4/1/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "command.hpp"
  15 #include "chimera.h"
  16
  17
  18 /***********************************************************/
  19
  20 class ChimeraBellerophonCommand : public Command {
  21 public:
  22         ChimeraBellerophonCommand(string);
  23         ~ChimeraBellerophonCommand();
  24         int execute();
  25         void help();
  26
  27 private:
  28
  29         bool abort, filter, correction;
  30         string fastafile, outputDir;
  31         int processors, window, increment, numSeqs;
  32         Chimera* chimera;
  33         vector<string> outputNames;
  34         vector<string> fastaFileNames;
  35 };
  36
  37 /***********************************************************/
  38
  39 #endif
  40
  41