Mothur.xcodeproj/project.pbxproj

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 411                 A74D365A137DAB8300332B0C /* alnparams.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alnparams.cpp; sourceTree = "<group>"; };
 412                 A74D365B137DAB8300332B0C /* alnparams.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alnparams.h; sourceTree = "<group>"; };
 413                 A74D365C137DAB8300332B0C /* alpha.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alpha.cpp; sourceTree = "<group>"; };
 414                 A74D365D137DAB8300332B0C /* alpha.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alpha.h; sourceTree = "<group>"; };
 415                 A74D365E137DAB8300332B0C /* alpha2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alpha2.cpp; sourceTree = "<group>"; };
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 417                 A74D3660137DAB8300332B0C /* chime.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chime.h; sourceTree = "<group>"; };
 418                 A74D3661137DAB8300332B0C /* diagbox.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = diagbox.h; sourceTree = "<group>"; };
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 420                 A74D3663137DAB8300332B0C /* evalue.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = evalue.h; sourceTree = "<group>"; };
 421                 A74D3664137DAB8300332B0C /* fractid.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fractid.cpp; sourceTree = "<group>"; };
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 427                 A74D366A137DAB8300332B0C /* make3way.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = make3way.cpp; sourceTree = "<group>"; };
 428                 A74D366B137DAB8300332B0C /* mx.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mx.cpp; sourceTree = "<group>"; };
 429                 A74D366C137DAB8300332B0C /* mx.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mx.h; sourceTree = "<group>"; };
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 431                 A74D366E137DAB8300332B0C /* myutils.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = myutils.cpp; sourceTree = "<group>"; };
 432                 A74D366F137DAB8300332B0C /* myutils.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myutils.h; sourceTree = "<group>"; };
 433                 A74D3670137DAB8300332B0C /* orf.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = orf.h; sourceTree = "<group>"; };
 434                 A74D3671137DAB8300332B0C /* out.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = out.h; sourceTree = "<group>"; };
 435                 A74D3672137DAB8300332B0C /* path.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = path.cpp; sourceTree = "<group>"; };
 436                 A74D3673137DAB8300332B0C /* path.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = path.h; sourceTree = "<group>"; };
 437                 A74D3674137DAB8300332B0C /* searchchime.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = searchchime.cpp; sourceTree = "<group>"; };
 438                 A74D3675137DAB8300332B0C /* seq.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seq.h; sourceTree = "<group>"; };
 439                 A74D3676137DAB8300332B0C /* seqdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqdb.cpp; sourceTree = "<group>"; };
 440                 A74D3677137DAB8300332B0C /* seqdb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqdb.h; sourceTree = "<group>"; };
 441                 A74D3678137DAB8300332B0C /* setnucmx.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setnucmx.cpp; sourceTree = "<group>"; };
 442                 A74D3679137DAB8300332B0C /* sfasta.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sfasta.cpp; sourceTree = "<group>"; };
 443                 A74D367A137DAB8300332B0C /* sfasta.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sfasta.h; sourceTree = "<group>"; };
 444                 A74D367B137DAB8300332B0C /* svnmods.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = svnmods.h; sourceTree = "<group>"; };
 445                 A74D367C137DAB8300332B0C /* svnversion.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = svnversion.h; sourceTree = "<group>"; };
 446                 A74D367D137DAB8300332B0C /* timers.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = timers.h; sourceTree = "<group>"; };
 447                 A74D367E137DAB8300332B0C /* timing.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = timing.h; sourceTree = "<group>"; };
 448                 A74D367F137DAB8300332B0C /* tracebackbit.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tracebackbit.cpp; sourceTree = "<group>"; };
 449                 A74D3680137DAB8300332B0C /* uc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uc.h; sourceTree = "<group>"; };
 450                 A74D3681137DAB8300332B0C /* uchime_main.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uchime_main.cpp; sourceTree = "<group>"; };
 451                 A74D3682137DAB8300332B0C /* ultra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ultra.h; sourceTree = "<group>"; };
 452                 A74D3683137DAB8300332B0C /* usort.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = usort.cpp; sourceTree = "<group>"; };
 453                 A74D3684137DAB8300332B0C /* viterbifast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = viterbifast.cpp; sourceTree = "<group>"; };
 454                 A74D3685137DAB8300332B0C /* windex.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = windex.h; sourceTree = "<group>"; };
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 456                 A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerauchimecommand.h; sourceTree = "<group>"; };
 457                 A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerauchimecommand.cpp; sourceTree = "<group>"; };
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 460                 A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = "<group>"; };
 461                 A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = "<group>"; };
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 485                 A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = "<group>"; };
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 488                 A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuassociationcommand.cpp; sourceTree = "<group>"; };
 489                 A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuassociationcommand.h; sourceTree = "<group>"; };
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 586                 A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cmdargs.cpp; sourceTree = "<group>"; };
 587                 A7E9B6A512D37EC400DA6239 /* cmdargs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = cmdargs.h; sourceTree = "<group>"; };
 588                 A7E9B6A612D37EC400DA6239 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = SOURCE_ROOT; };
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 590                 A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
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 592                 A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = SOURCE_ROOT; };
 593                 A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = SOURCE_ROOT; };
 594                 A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
 595                 A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
 596                 A7E9B6AE12D37EC400DA6239 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
 597                 A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = SOURCE_ROOT; };
 598                 A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = SOURCE_ROOT; };
 599                 A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = SOURCE_ROOT; };
 600                 A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = SOURCE_ROOT; };
 601                 A7E9B6B312D37EC400DA6239 /* common.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = common.h; sourceTree = "<group>"; };
 602                 A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = SOURCE_ROOT; };
 603                 A7E9B6B512D37EC400DA6239 /* consensuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = consensuscommand.cpp; sourceTree = "<group>"; };
 604                 A7E9B6B612D37EC400DA6239 /* consensuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = consensuscommand.h; sourceTree = "<group>"; };
 605                 A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = consensusseqscommand.cpp; sourceTree = "<group>"; };
 606                 A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = consensusseqscommand.h; sourceTree = "<group>"; };
 607                 A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = corraxescommand.cpp; sourceTree = "<group>"; };
 608                 A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = corraxescommand.h; sourceTree = "<group>"; };
 609                 A7E9B6BB12D37EC400DA6239 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
 610                 A7E9B6BC12D37EC400DA6239 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
 611                 A7E9B6BD12D37EC400DA6239 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
 612                 A7E9B6BE12D37EC400DA6239 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
 613                 A7E9B6BF12D37EC400DA6239 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
 614                 A7E9B6C012D37EC400DA6239 /* dayhoff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dayhoff.h; sourceTree = "<group>"; };
 615                 A7E9B6C112D37EC400DA6239 /* decalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = decalc.cpp; sourceTree = "<group>"; };
 616                 A7E9B6C212D37EC400DA6239 /* decalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = decalc.h; sourceTree = "<group>"; };
 617                 A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
 618                 A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
 619                 A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = degapseqscommand.cpp; sourceTree = "<group>"; };
 620                 A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = degapseqscommand.h; sourceTree = "<group>"; };
 621                 A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deuniqueseqscommand.cpp; sourceTree = "<group>"; };
 622                 A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deuniqueseqscommand.h; sourceTree = "<group>"; };
 623                 A7E9B6C912D37EC400DA6239 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = SOURCE_ROOT; };
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 625                 A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distancecommand.cpp; sourceTree = "<group>"; };
 626                 A7E9B6CC12D37EC400DA6239 /* distancecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = distancecommand.h; sourceTree = "<group>"; };
 627                 A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distancedb.cpp; sourceTree = "<group>"; };
 628                 A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = distancedb.hpp; sourceTree = "<group>"; };
 629                 A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distclearcut.cpp; sourceTree = "<group>"; };
 630                 A7E9B6D012D37EC400DA6239 /* distclearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = distclearcut.h; sourceTree = "<group>"; };
 631                 A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dlibshuff.cpp; sourceTree = SOURCE_ROOT; };
 632                 A7E9B6D212D37EC400DA6239 /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dlibshuff.h; sourceTree = SOURCE_ROOT; };
 633                 A7E9B6D312D37EC400DA6239 /* dmat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dmat.cpp; sourceTree = "<group>"; };
 634                 A7E9B6D412D37EC400DA6239 /* dmat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dmat.h; sourceTree = "<group>"; };
 635                 A7E9B6D512D37EC400DA6239 /* eachgapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdist.h; sourceTree = "<group>"; };
 636                 A7E9B6D612D37EC400DA6239 /* eachgapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapignore.h; sourceTree = "<group>"; };
 637                 A7E9B6D712D37EC400DA6239 /* efron.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = efron.cpp; sourceTree = "<group>"; };
 638                 A7E9B6D812D37EC400DA6239 /* efron.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = efron.h; sourceTree = "<group>"; };
 639                 A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = endiannessmacros.h; sourceTree = SOURCE_ROOT; };
 640                 A7E9B6DA12D37EC400DA6239 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = SOURCE_ROOT; };
 641                 A7E9B6DB12D37EC400DA6239 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = SOURCE_ROOT; };
 642                 A7E9B6DC12D37EC400DA6239 /* fasta.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fasta.cpp; sourceTree = "<group>"; };
 643                 A7E9B6DD12D37EC400DA6239 /* fasta.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fasta.h; sourceTree = "<group>"; };
 644                 A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
 645                 A7E9B6DF12D37EC400DA6239 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
 646                 A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = SOURCE_ROOT; };
 647                 A7E9B6E112D37EC400DA6239 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = SOURCE_ROOT; };
 648                 A7E9B6E212D37EC400DA6239 /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filters.h; sourceTree = "<group>"; };
 649                 A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filterseqscommand.cpp; sourceTree = "<group>"; };
 650                 A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filterseqscommand.h; sourceTree = "<group>"; };
 651                 A7E9B6E712D37EC400DA6239 /* flowdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = flowdata.cpp; sourceTree = "<group>"; };
 652                 A7E9B6E812D37EC400DA6239 /* flowdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = flowdata.h; sourceTree = "<group>"; };
 653                 A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatcolumn.cpp; sourceTree = "<group>"; };
 654                 A7E9B6EA12D37EC400DA6239 /* formatcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatcolumn.h; sourceTree = "<group>"; };
 655                 A7E9B6EB12D37EC400DA6239 /* formatmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatmatrix.h; sourceTree = "<group>"; };
 656                 A7E9B6EC12D37EC400DA6239 /* formatphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatphylip.cpp; sourceTree = "<group>"; };
 657                 A7E9B6ED12D37EC400DA6239 /* formatphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatphylip.h; sourceTree = "<group>"; };
 658                 A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
 659                 A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
 660                 A7E9B6F012D37EC400DA6239 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
 661                 A7E9B6F112D37EC400DA6239 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
 662                 A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
 663                 A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
 664                 A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupscommand.cpp; sourceTree = "<group>"; };
 665                 A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupscommand.h; sourceTree = "<group>"; };
 666                 A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
 667                 A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
 668                 A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlineagecommand.cpp; sourceTree = "<group>"; };
 669                 A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlineagecommand.h; sourceTree = "<group>"; };
 670                 A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlistcountcommand.cpp; sourceTree = "<group>"; };
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 676                 A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getotuscommand.cpp; sourceTree = "<group>"; };
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 678                 A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrabundcommand.cpp; sourceTree = "<group>"; };
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 680                 A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = "<group>"; };
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 682                 A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsabundcommand.cpp; sourceTree = "<group>"; };
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 684                 A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getseqscommand.cpp; sourceTree = "<group>"; };
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 686                 A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsharedotucommand.cpp; sourceTree = "<group>"; };
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 690                 A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = gotohoverlap.cpp; sourceTree = SOURCE_ROOT; };
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 696                 A7E9B71612D37EC400DA6239 /* hamming.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hamming.cpp; sourceTree = "<group>"; };
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 706                 A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapsim.cpp; sourceTree = SOURCE_ROOT; };
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 710                 A7E9B72412D37EC400DA6239 /* heip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heip.cpp; sourceTree = "<group>"; };
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 763                 A7E9B75B12D37EC400DA6239 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = SOURCE_ROOT; };
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 767                 A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
 768                 A7E9B76012D37EC400DA6239 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
 769                 A7E9B76112D37EC400DA6239 /* nast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nast.cpp; sourceTree = SOURCE_ROOT; };
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 771                 A7E9B76312D37EC400DA6239 /* nastreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nastreport.cpp; sourceTree = SOURCE_ROOT; };
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 773                 A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = needlemanoverlap.cpp; sourceTree = SOURCE_ROOT; };
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 775                 A7E9B76712D37EC400DA6239 /* noalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = noalign.cpp; sourceTree = SOURCE_ROOT; };
 776                 A7E9B76812D37EC400DA6239 /* noalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = noalign.hpp; sourceTree = SOURCE_ROOT; };
 777                 A7E9B76912D37EC400DA6239 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
 778                 A7E9B76A12D37EC400DA6239 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
 779                 A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = normalizesharedcommand.cpp; sourceTree = "<group>"; };
 780                 A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = normalizesharedcommand.h; sourceTree = "<group>"; };
 781                 A7E9B76D12D37EC400DA6239 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
 782                 A7E9B76E12D37EC400DA6239 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
 783                 A7E9B76F12D37EC400DA6239 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
 784                 A7E9B77012D37EC400DA6239 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = SOURCE_ROOT; };
 785                 A7E9B77112D37EC400DA6239 /* odum.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = odum.cpp; sourceTree = "<group>"; };
 786                 A7E9B77212D37EC400DA6239 /* odum.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = odum.h; sourceTree = "<group>"; };
 787                 A7E9B77312D37EC400DA6239 /* onegapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapdist.h; sourceTree = "<group>"; };
 788                 A7E9B77412D37EC400DA6239 /* onegapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapignore.h; sourceTree = "<group>"; };
 789                 A7E9B77512D37EC400DA6239 /* optionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = optionparser.cpp; sourceTree = SOURCE_ROOT; };
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 791                 A7E9B77712D37EC400DA6239 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
 792                 A7E9B77812D37EC400DA6239 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
 793                 A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuhierarchycommand.cpp; sourceTree = "<group>"; };
 794                 A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuhierarchycommand.h; sourceTree = "<group>"; };
 795                 A7E9B77B12D37EC400DA6239 /* overlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = overlap.cpp; sourceTree = SOURCE_ROOT; };
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 800                 A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsefastaqcommand.h; sourceTree = "<group>"; };
 801                 A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistscommand.cpp; sourceTree = "<group>"; };
 802                 A7E9B78212D37EC400DA6239 /* parselistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistscommand.h; sourceTree = "<group>"; };
 803                 A7E9B78312D37EC400DA6239 /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
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 809                 A7E9B78912D37EC400DA6239 /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = "<group>"; };
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 820                 A7E9B79412D37EC400DA6239 /* pintail.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pintail.h; sourceTree = "<group>"; };
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 847                 A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
 848                 A7E9B7B012D37EC400DA6239 /* readblast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readblast.cpp; sourceTree = "<group>"; };
 849                 A7E9B7B112D37EC400DA6239 /* readblast.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readblast.h; sourceTree = "<group>"; };
 850                 A7E9B7B212D37EC400DA6239 /* readcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcluster.cpp; sourceTree = "<group>"; };
 851                 A7E9B7B312D37EC400DA6239 /* readcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcluster.h; sourceTree = "<group>"; };
 852                 A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcolumn.cpp; sourceTree = "<group>"; };
 853                 A7E9B7B512D37EC400DA6239 /* readcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcolumn.h; sourceTree = "<group>"; };
 854                 A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
 855                 A7E9B7B712D37EC400DA6239 /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
 856                 A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
 857                 A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
 858                 A7E9B7BC12D37EC400DA6239 /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
 859                 A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylip.cpp; sourceTree = "<group>"; };
 860                 A7E9B7BE12D37EC400DA6239 /* readphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylip.h; sourceTree = "<group>"; };
 861                 A7E9B7BF12D37EC400DA6239 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
 862                 A7E9B7C012D37EC400DA6239 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
 863                 A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
 864                 A7E9B7C212D37EC400DA6239 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
 865                 A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removegroupscommand.cpp; sourceTree = "<group>"; };
 866                 A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removegroupscommand.h; sourceTree = "<group>"; };
 867                 A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removelineagecommand.cpp; sourceTree = "<group>"; };
 868                 A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removelineagecommand.h; sourceTree = "<group>"; };
 869                 A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeotuscommand.cpp; sourceTree = "<group>"; };
 870                 A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeotuscommand.h; sourceTree = "<group>"; };
 871                 A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeseqscommand.cpp; sourceTree = "<group>"; };
 872                 A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeseqscommand.h; sourceTree = "<group>"; };
 873                 A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = reportfile.cpp; sourceTree = "<group>"; };
 874                 A7E9B7CC12D37EC400DA6239 /* reportfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = reportfile.h; sourceTree = "<group>"; };
 875                 A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = reversecommand.cpp; sourceTree = "<group>"; };
 876                 A7E9B7CE12D37EC400DA6239 /* reversecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = reversecommand.h; sourceTree = "<group>"; };
 877                 A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
 878                 A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
 879                 A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = screenseqscommand.cpp; sourceTree = "<group>"; };
 880                 A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = screenseqscommand.h; sourceTree = "<group>"; };
 881                 A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = secondarystructurecommand.cpp; sourceTree = "<group>"; };
 882                 A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = secondarystructurecommand.h; sourceTree = "<group>"; };
 883                 A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sensspeccommand.cpp; sourceTree = "<group>"; };
 884                 A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sensspeccommand.h; sourceTree = "<group>"; };
 885                 A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqerrorcommand.cpp; sourceTree = "<group>"; };
 886                 A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqerrorcommand.h; sourceTree = "<group>"; };
 887                 A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqsummarycommand.cpp; sourceTree = "<group>"; };
 888                 A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqsummarycommand.h; sourceTree = "<group>"; };
 889                 A7E9B7DB12D37EC400DA6239 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
 890                 A7E9B7DC12D37EC400DA6239 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
 891                 A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencedb.cpp; sourceTree = "<group>"; };
 892                 A7E9B7DE12D37EC400DA6239 /* sequencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencedb.h; sourceTree = "<group>"; };
 893                 A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setdircommand.cpp; sourceTree = "<group>"; };
 894                 A7E9B7E012D37EC400DA6239 /* setdircommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setdircommand.h; sourceTree = "<group>"; };
 895                 A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = "<group>"; };
 896                 A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = "<group>"; };
 897                 A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffinfocommand.cpp; sourceTree = "<group>"; };
 898                 A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffinfocommand.h; sourceTree = "<group>"; };
 899                 A7E9B7E512D37EC400DA6239 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
 900                 A7E9B7E612D37EC400DA6239 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
 901                 A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannoneven.cpp; sourceTree = "<group>"; };
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 903                 A7E9B7E912D37EC400DA6239 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
 904                 A7E9B7EA12D37EC400DA6239 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
 905                 A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderbergs.cpp; sourceTree = "<group>"; };
 906                 A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderbergs.h; sourceTree = "<group>"; };
 907                 A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
 908                 A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
 909                 A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
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 911                 A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
 912                 A7E9B7F312D37EC400DA6239 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
 913                 A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
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 915                 A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjackknife.cpp; sourceTree = "<group>"; };
 916                 A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjackknife.h; sourceTree = "<group>"; };
 917                 A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
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 919                 A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
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 922                 A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
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 928                 A7E9B80312D37EC400DA6239 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
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 933                 A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
 934                 A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
 935                 A7E9B80A12D37EC400DA6239 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
 936                 A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
 937                 A7E9B80C12D37EC400DA6239 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
 938                 A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
 939                 A7E9B80E12D37EC400DA6239 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
 940                 A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundfloatvector.cpp; sourceTree = "<group>"; };
 941                 A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundfloatvector.h; sourceTree = "<group>"; };
 942                 A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
 943                 A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
 944                 A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
 945                 A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
 946                 A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
 947                 A7E9B81612D37EC400DA6239 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
 948                 A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
 949                 A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
 950                 A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
 951                 A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
 952                 A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
 953                 A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
 954                 A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
 955                 A7E9B81E12D37EC400DA6239 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
 956                 A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
 957                 A7E9B82012D37EC400DA6239 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
 958                 A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
 959                 A7E9B82212D37EC400DA6239 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
 960                 A7E9B82312D37EC400DA6239 /* sharedutilities.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedutilities.cpp; sourceTree = SOURCE_ROOT; };
 961                 A7E9B82412D37EC400DA6239 /* sharedutilities.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedutilities.h; sourceTree = SOURCE_ROOT; };
 962                 A7E9B82512D37EC400DA6239 /* shen.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shen.cpp; sourceTree = "<group>"; };
 963                 A7E9B82612D37EC400DA6239 /* shen.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shen.h; sourceTree = "<group>"; };
 964                 A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shhhercommand.cpp; sourceTree = "<group>"; };
 965                 A7E9B82812D37EC400DA6239 /* shhhercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shhhercommand.h; sourceTree = "<group>"; };
 966                 A7E9B82912D37EC400DA6239 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
 967                 A7E9B82A12D37EC400DA6239 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
 968                 A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpsoneven.cpp; sourceTree = "<group>"; };
 969                 A7E9B82C12D37EC400DA6239 /* simpsoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpsoneven.h; sourceTree = "<group>"; };
 970                 A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = SOURCE_ROOT; };
 971                 A7E9B82E12D37EC400DA6239 /* slayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slayer.cpp; sourceTree = "<group>"; };
 972                 A7E9B82F12D37EC400DA6239 /* slayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slayer.h; sourceTree = "<group>"; };
 973                 A7E9B83012D37EC400DA6239 /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slibshuff.cpp; sourceTree = SOURCE_ROOT; };
 974                 A7E9B83112D37EC400DA6239 /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slibshuff.h; sourceTree = SOURCE_ROOT; };
 975                 A7E9B83212D37EC400DA6239 /* smithwilson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = smithwilson.cpp; sourceTree = "<group>"; };
 976                 A7E9B83312D37EC400DA6239 /* smithwilson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = smithwilson.h; sourceTree = "<group>"; };
 977                 A7E9B83412D37EC400DA6239 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
 978                 A7E9B83512D37EC400DA6239 /* soergel.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = soergel.cpp; sourceTree = "<group>"; };
 979                 A7E9B83612D37EC400DA6239 /* soergel.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = soergel.h; sourceTree = "<group>"; };
 980                 A7E9B83712D37EC400DA6239 /* solow.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = solow.cpp; sourceTree = "<group>"; };
 981                 A7E9B83812D37EC400DA6239 /* solow.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = solow.h; sourceTree = "<group>"; };
 982                 A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
 983                 A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
 984                 A7E9B83B12D37EC400DA6239 /* spearman.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = spearman.cpp; sourceTree = "<group>"; };
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 986                 A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = speciesprofile.cpp; sourceTree = "<group>"; };
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 988                 A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = "<group>"; };
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 990                 A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitgroupscommand.cpp; sourceTree = "<group>"; };
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 992                 A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitmatrix.cpp; sourceTree = "<group>"; };
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 996                 A7E9B84712D37EC400DA6239 /* structchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structchord.cpp; sourceTree = "<group>"; };
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 998                 A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structeuclidean.cpp; sourceTree = "<group>"; };
 999                 A7E9B84A12D37EC400DA6239 /* structeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structeuclidean.h; sourceTree = "<group>"; };
1000                 A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structkulczynski.cpp; sourceTree = "<group>"; };
1001                 A7E9B84C12D37EC400DA6239 /* structkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structkulczynski.h; sourceTree = "<group>"; };
1002                 A7E9B84D12D37EC400DA6239 /* structpearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structpearson.cpp; sourceTree = "<group>"; };
1003                 A7E9B84E12D37EC400DA6239 /* structpearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structpearson.h; sourceTree = "<group>"; };
1004                 A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = subsamplecommand.cpp; sourceTree = "<group>"; };
1005                 A7E9B85012D37EC400DA6239 /* subsamplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = subsamplecommand.h; sourceTree = "<group>"; };
1006                 A7E9B85112D37EC400DA6239 /* suffixdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixdb.cpp; sourceTree = "<group>"; };
1007                 A7E9B85212D37EC400DA6239 /* suffixdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixdb.hpp; sourceTree = "<group>"; };
1008                 A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixnodes.cpp; sourceTree = "<group>"; };
1009                 A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixnodes.hpp; sourceTree = "<group>"; };
1010                 A7E9B85512D37EC400DA6239 /* suffixtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixtree.cpp; sourceTree = "<group>"; };
1011                 A7E9B85612D37EC400DA6239 /* suffixtree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixtree.hpp; sourceTree = "<group>"; };
1012                 A7E9B85712D37EC400DA6239 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
1013                 A7E9B85812D37EC400DA6239 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
1014                 A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
1015                 A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
1016                 A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = systemcommand.cpp; sourceTree = "<group>"; };
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1018                 A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = taxonomyequalizer.cpp; sourceTree = "<group>"; };
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1024                 A7E9B86312D37EC400DA6239 /* treegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treegroupscommand.h; sourceTree = "<group>"; };
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1026                 A7E9B86512D37EC400DA6239 /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
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1028                 A7E9B86712D37EC400DA6239 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
1029                 A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimflowscommand.cpp; sourceTree = "<group>"; };
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1031                 A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimseqscommand.cpp; sourceTree = "<group>"; };
1032                 A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimseqscommand.h; sourceTree = "<group>"; };
1033                 A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
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1035                 A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
1036                 A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
1037                 A7E9B87012D37EC400DA6239 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
1038                 A7E9B87112D37EC400DA6239 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
1039                 A7E9B87212D37EC400DA6239 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
1040                 A7E9B87312D37EC400DA6239 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
1041                 A7E9B87412D37EC400DA6239 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = SOURCE_ROOT; };
1042                 A7E9B87512D37EC400DA6239 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = SOURCE_ROOT; };
1043                 A7E9B87612D37EC400DA6239 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = SOURCE_ROOT; };
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1045                 A7E9B87812D37EC400DA6239 /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venn.cpp; sourceTree = SOURCE_ROOT; };
1046                 A7E9B87912D37EC400DA6239 /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venn.h; sourceTree = SOURCE_ROOT; };
1047                 A7E9B87A12D37EC400DA6239 /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venncommand.cpp; sourceTree = "<group>"; };
1048                 A7E9B87B12D37EC400DA6239 /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venncommand.h; sourceTree = "<group>"; };
1049                 A7E9B87C12D37EC400DA6239 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
1050                 A7E9B87D12D37EC400DA6239 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
1051                 A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
1052                 A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = "<group>"; };
1053                 A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
1054                 A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifytreecommand.cpp; sourceTree = "<group>"; };
1055                 A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifytreecommand.h; sourceTree = "<group>"; };
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1057                 A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequenceparser.cpp; sourceTree = "<group>"; };
1058                 A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
1059                 A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mantelcommand.cpp; sourceTree = "<group>"; };
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1063                 A7FA2ABF14A0E881007C09A6 /* daxpy.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = daxpy.f; sourceTree = "<group>"; };
1064                 A7FA2AC014A0E881007C09A6 /* ddot.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = ddot.f; sourceTree = "<group>"; };
1065                 A7FA2AC114A0E881007C09A6 /* dpbfa.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbfa.f; sourceTree = "<group>"; };
1066                 A7FA2AC214A0E881007C09A6 /* dpbsl.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbsl.f; sourceTree = "<group>"; };
1067                 A7FA2AC314A0E881007C09A6 /* interv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = interv.f; sourceTree = "<group>"; };
1068                 A7FA2AC414A0E881007C09A6 /* sgram.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sgram.f; sourceTree = "<group>"; };
1069                 A7FA2AC514A0E881007C09A6 /* sinerp.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sinerp.f; sourceTree = "<group>"; };
1070                 A7FA2AC614A0E881007C09A6 /* stxwx.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = stxwx.f; sourceTree = "<group>"; };
1071                 A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sslvrg.f; sourceTree = "<group>"; };
1072                 A7FA2B5A14A0F0C2007C09A6 /* intrv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = intrv.f; sourceTree = "<group>"; };
1073                 A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = linearalgebra.h; sourceTree = "<group>"; };
1074                 A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
1075                 A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = "<group>"; };
1076                 A7FC486612D795D60055BC5C /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pcacommand.cpp; sourceTree = "<group>"; };
1077                 A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcurrentcommand.h; sourceTree = "<group>"; };
1078                 A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcurrentcommand.cpp; sourceTree = "<group>"; };
1079                 A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setcurrentcommand.h; sourceTree = "<group>"; };
1080                 A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setcurrentcommand.cpp; sourceTree = "<group>"; };
1081                 A7FF19F0140FFDA500AD216D /* trimoligos.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimoligos.h; sourceTree = "<group>"; };
1082                 A7FF19F1140FFDA500AD216D /* trimoligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimoligos.cpp; sourceTree = "<group>"; };
1083                 A7FFB556142CA02C004884F2 /* summarytaxcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarytaxcommand.h; sourceTree = "<group>"; };
1084                 A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarytaxcommand.cpp; sourceTree = "<group>"; };
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1086 /* End PBXFileReference section */
1087
1088 /* Begin PBXFrameworksBuildPhase section */
1089                 8DD76FAD0486AB0100D96B5E /* Frameworks */ = {
1090                         isa = PBXFrameworksBuildPhase;
1091                         buildActionMask = 2147483647;
1092                         files = (
1093                         );
1094                         runOnlyForDeploymentPostprocessing = 0;
1095                 };
1096 /* End PBXFrameworksBuildPhase section */
1097
1098 /* Begin PBXGroup section */
1099                 08FB7794FE84155DC02AAC07 /* mothur */ = {
1100                         isa = PBXGroup;
1101                         children = (
1102                                 08FB7795FE84155DC02AAC07 /* Source */,
1103                                 C6A0FF2B0290797F04C91782 /* Documentation */,
1104                                 1AB674ADFE9D54B511CA2CBB /* Products */,
1105                         );
1106                         name = mothur;
1107                         sourceTree = "<group>";
1108                 };
1109                 08FB7795FE84155DC02AAC07 /* Source */ = {
1110                         isa = PBXGroup;
1111                         children = (
1112                                 A7A61F1A130035C800E05B6B /* LICENSE */,
1113                                 A70332B512D3A13400761E33 /* makefile */,
1114                                 A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */,
1115                                 A7E9BA4F12D398D700DA6239 /* clearcut */,
1116                                 A7E9B69812D37EC400DA6239 /* cluster.cpp */,
1117                                 A7E9B69912D37EC400DA6239 /* cluster.hpp */,
1118                                 A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */,
1119                                 A7E9B69B12D37EC400DA6239 /* clusterclassic.h */,
1120                                 A7E9BA3F12D395F700DA6239 /* calculators */,
1121                                 A7E9BA4512D3965600DA6239 /* chimera */,
1122                                 A7E9BA4B12D3966900DA6239 /* classifier */,
1123                                 A7E9B6A612D37EC400DA6239 /* collect.cpp */,
1124                                 A7E9B6A712D37EC400DA6239 /* collect.h */,
1125                                 A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */,
1126                                 A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */,
1127                                 A7E9BA3812D3956100DA6239 /* commands */,
1128                                 A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */,
1129                                 A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */,
1130                                 A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */,
1131                                 A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */,
1132                                 A7DAAFA3133A254E003956EB /* commandparameter.h */,
1133                                 A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */,
1134                                 A7E9BA4212D3960D00DA6239 /* containers */,
1135                                 A7AACFBA132FE008003D6C4D /* currentfile.h */,
1136                                 A7E9B6C912D37EC400DA6239 /* display.h */,
1137                                 A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */,
1138                                 A7E9B6D212D37EC400DA6239 /* dlibshuff.h */,
1139                                 A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */,
1140                                 A7E9B6DA12D37EC400DA6239 /* engine.cpp */,
1141                                 A7E9B6DB12D37EC400DA6239 /* engine.hpp */,
1142                                 A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */,
1143                                 A7E9B6E112D37EC400DA6239 /* fileoutput.h */,
1144                                 A7E9B71112D37EC400DA6239 /* gotohoverlap.hpp */,
1145                                 A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */,
1146                                 A7E9B71812D37EC400DA6239 /* hcluster.cpp */,
1147                                 A7E9B71912D37EC400DA6239 /* hcluster.h */,
1148                                 A7E9B71C12D37EC400DA6239 /* heatmap.cpp */,
1149                                 A7E9B71D12D37EC400DA6239 /* heatmap.h */,
1150                                 A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */,
1151                                 A7E9B72112D37EC400DA6239 /* heatmapsim.h */,
1152                                 A7E9B72E12D37EC400DA6239 /* inputdata.h */,
1153                                 A7E9B72D12D37EC400DA6239 /* inputdata.cpp */,
1154                                 A7E9B73912D37EC400DA6239 /* libshuff.cpp */,
1155                                 A7E9B73A12D37EC400DA6239 /* libshuff.h */,
1156                                 A7FC480C12D788F20055BC5C /* linearalgebra.h */,
1157                                 A7FC480D12D788F20055BC5C /* linearalgebra.cpp */,
1158                                 A7E9BA5612D39BD800DA6239 /* metastats */,
1159                                 A7E9B75B12D37EC400DA6239 /* mothur.cpp */,
1160                                 A7E9B75C12D37EC400DA6239 /* mothur.h */,
1161                                 A7E9B75D12D37EC400DA6239 /* mothurout.cpp */,
1162                                 A7E9B75E12D37EC400DA6239 /* mothurout.h */,
1163                                 A774104714696F320098E6AC /* myseqdist.h */,
1164                                 A774104614696F320098E6AC /* myseqdist.cpp */,
1165                                 A7E9B76112D37EC400DA6239 /* nast.cpp */,
1166                                 A7E9B76212D37EC400DA6239 /* nast.hpp */,
1167                                 A7E9B76312D37EC400DA6239 /* nastreport.cpp */,
1168                                 A7E9B76412D37EC400DA6239 /* nastreport.hpp */,
1169                                 A7E9B76712D37EC400DA6239 /* noalign.cpp */,
1170                                 A7E9B76812D37EC400DA6239 /* noalign.hpp */,
1171                                 A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */,
1172                                 A7E9B76612D37EC400DA6239 /* needlemanoverlap.hpp */,
1173                                 A7E9B77012D37EC400DA6239 /* observable.h */,
1174                                 A7E9B77512D37EC400DA6239 /* optionparser.cpp */,
1175                                 A7E9B77612D37EC400DA6239 /* optionparser.h */,
1176                                 A7E9B77B12D37EC400DA6239 /* overlap.cpp */,
1177                                 A7E9B77C12D37EC400DA6239 /* overlap.hpp */,
1178                                 A7E9B79B12D37EC400DA6239 /* progress.cpp */,
1179                                 A7E9B79C12D37EC400DA6239 /* progress.hpp */,
1180                                 A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */,
1181                                 A7E9B7A612D37EC400DA6239 /* rarecalc.h */,
1182                                 A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */,
1183                                 A7E9B7A812D37EC400DA6239 /* raredisplay.h */,
1184                                 A7E9B7A912D37EC400DA6239 /* rarefact.cpp */,
1185                                 A7E9B7AA12D37EC400DA6239 /* rarefact.h */,
1186                                 A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */,
1187                                 7E6BE10812F710D8007ADDBE /* refchimeratest.h */,
1188                                 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */,
1189                                 A77410F514697C300098E6AC /* seqnoise.h */,
1190                                 A77410F414697C300098E6AC /* seqnoise.cpp */,
1191                                 A7E9BA5312D39A5E00DA6239 /* read */,
1192                                 A7E9B82312D37EC400DA6239 /* sharedutilities.cpp */,
1193                                 A7E9B82412D37EC400DA6239 /* sharedutilities.h */,
1194                                 A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */,
1195                                 A7E9B83012D37EC400DA6239 /* slibshuff.cpp */,
1196                                 A7E9B83112D37EC400DA6239 /* slibshuff.h */,
1197                                 A7876A28152A018B00A0AE86 /* subsample.h */,
1198                                 A7876A25152A017C00A0AE86 /* subsample.cpp */,
1199                                 A7C3DC0E14FE469500FE1924 /* trialswap2.h */,
1200                                 A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */,
1201                                 A7FF19F0140FFDA500AD216D /* trimoligos.h */,
1202                                 A7FF19F1140FFDA500AD216D /* trimoligos.cpp */,
1203                                 A7E9B87412D37EC400DA6239 /* validcalculator.cpp */,
1204                                 A7E9B87512D37EC400DA6239 /* validcalculator.h */,
1205                                 A7E9B87612D37EC400DA6239 /* validparameter.cpp */,
1206                                 A7E9B87712D37EC400DA6239 /* validparameter.h */,
1207                                 A7E9B87812D37EC400DA6239 /* venn.cpp */,
1208                                 A7E9B87912D37EC400DA6239 /* venn.h */,
1209                                 A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */,
1210                         );
1211                         name = Source;
1212                         sourceTree = "<group>";
1213                 };
1214                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
1215                         isa = PBXGroup;
1216                         children = (
1217                                 8DD76FB20486AB0100D96B5E /* Mothur */,
1218                         );
1219                         name = Products;
1220                         sourceTree = "<group>";
1221                 };
1222                 A74D3644137DA7CE00332B0C /* uchime */ = {
1223                         isa = PBXGroup;
1224                         children = (
1225                                 A74D3655137DAB8300332B0C /* addtargets2.cpp */,
1226                                 A74D3656137DAB8300332B0C /* alignchime.cpp */,
1227                                 A74D3657137DAB8300332B0C /* alignchimel.cpp */,
1228                                 A74D3658137DAB8300332B0C /* allocs.h */,
1229                                 A74D3659137DAB8300332B0C /* alnheuristics.h */,
1230                                 A74D365A137DAB8300332B0C /* alnparams.cpp */,
1231                                 A74D365B137DAB8300332B0C /* alnparams.h */,
1232                                 A74D365C137DAB8300332B0C /* alpha.cpp */,
1233                                 A74D365D137DAB8300332B0C /* alpha.h */,
1234                                 A74D365E137DAB8300332B0C /* alpha2.cpp */,
1235                                 A74D365F137DAB8300332B0C /* chainer.h */,
1236                                 A74D3660137DAB8300332B0C /* chime.h */,
1237                                 A74D3661137DAB8300332B0C /* diagbox.h */,
1238                                 A74D3662137DAB8300332B0C /* dp.h */,
1239                                 A74D3663137DAB8300332B0C /* evalue.h */,
1240                                 A74D3664137DAB8300332B0C /* fractid.cpp */,
1241                                 A74D3665137DAB8300332B0C /* getparents.cpp */,
1242                                 A74D3666137DAB8300332B0C /* globalalign2.cpp */,
1243                                 A74D3667137DAB8300332B0C /* help.h */,
1244                                 A74D3668137DAB8300332B0C /* hsp.h */,
1245                                 A74D3669137DAB8300332B0C /* hspfinder.h */,
1246                                 A74D366A137DAB8300332B0C /* make3way.cpp */,
1247                                 A74D366B137DAB8300332B0C /* mx.cpp */,
1248                                 A74D366C137DAB8300332B0C /* mx.h */,
1249                                 A74D366D137DAB8300332B0C /* myopts.h */,
1250                                 A74D366E137DAB8300332B0C /* myutils.cpp */,
1251                                 A74D366F137DAB8300332B0C /* myutils.h */,
1252                                 A74D3670137DAB8300332B0C /* orf.h */,
1253                                 A74D3671137DAB8300332B0C /* out.h */,
1254                                 A74D3672137DAB8300332B0C /* path.cpp */,
1255                                 A74D3673137DAB8300332B0C /* path.h */,
1256                                 A74D3674137DAB8300332B0C /* searchchime.cpp */,
1257                                 A74D3675137DAB8300332B0C /* seq.h */,
1258                                 A74D3676137DAB8300332B0C /* seqdb.cpp */,
1259                                 A74D3677137DAB8300332B0C /* seqdb.h */,
1260                                 A74D3678137DAB8300332B0C /* setnucmx.cpp */,
1261                                 A74D3679137DAB8300332B0C /* sfasta.cpp */,
1262                                 A74D367A137DAB8300332B0C /* sfasta.h */,
1263                                 A74D367B137DAB8300332B0C /* svnmods.h */,
1264                                 A74D367C137DAB8300332B0C /* svnversion.h */,
1265                                 A74D367D137DAB8300332B0C /* timers.h */,
1266                                 A74D367E137DAB8300332B0C /* timing.h */,
1267                                 A74D367F137DAB8300332B0C /* tracebackbit.cpp */,
1268                                 A74D3680137DAB8300332B0C /* uc.h */,
1269                                 A74D3681137DAB8300332B0C /* uchime_main.cpp */,
1270                                 A74D3682137DAB8300332B0C /* ultra.h */,
1271                                 A74D3683137DAB8300332B0C /* usort.cpp */,
1272                                 A74D3684137DAB8300332B0C /* viterbifast.cpp */,
1273                                 A74D3685137DAB8300332B0C /* windex.h */,
1274                                 A74D3686137DAB8300332B0C /* writechhit.cpp */,
1275                         );
1276                         name = uchime;
1277                         sourceTree = "<group>";
1278                 };
1279                 A7D161E7149F7F50000523E8 /* fortran */ = {
1280                         isa = PBXGroup;
1281                         children = (
1282                                 A7FA2B5A14A0F0C2007C09A6 /* intrv.f */,
1283                                 A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */,
1284                                 A7FA2ABC14A0E881007C09A6 /* bsplvb.f */,
1285                                 A7FA2ABD14A0E881007C09A6 /* bsplvd.f */,
1286                                 A7FA2ABE14A0E881007C09A6 /* bvalue.f */,
1287                                 A7FA2ABF14A0E881007C09A6 /* daxpy.f */,
1288                                 A7FA2AC014A0E881007C09A6 /* ddot.f */,
1289                                 A7FA2AC114A0E881007C09A6 /* dpbfa.f */,
1290                                 A7FA2AC214A0E881007C09A6 /* dpbsl.f */,
1291                                 A7FA2AC314A0E881007C09A6 /* interv.f */,
1292                                 A7FA2AC414A0E881007C09A6 /* sgram.f */,
1293                                 A7FA2AC514A0E881007C09A6 /* sinerp.f */,
1294                                 A7FA2AC614A0E881007C09A6 /* stxwx.f */,
1295                         );
1296                         name = fortran;
1297                         sourceTree = "<group>";
1298                 };
1299                 A7E9BA3812D3956100DA6239 /* commands */ = {
1300                         isa = PBXGroup;
1301                         children = (
1302                                 A7E9B6AE12D37EC400DA6239 /* command.hpp */,
1303                                 A7E9B65212D37EC300DA6239 /* aligncommand.h */,
1304                                 A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
1305                                 A7A61F2B130062E000E05B6B /* amovacommand.h */,
1306                                 A7A61F2C130062E000E05B6B /* amovacommand.cpp */,
1307                                 A71CB15F130B04A2001E7287 /* anosimcommand.h */,
1308                                 A71CB15E130B04A2001E7287 /* anosimcommand.cpp */,
1309                                 A7E9B66112D37EC300DA6239 /* binsequencecommand.h */,
1310                                 A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */,
1311                                 A7E9B66B12D37EC400DA6239 /* bootstrapsharedcommand.h */,
1312                                 A7E9B66A12D37EC400DA6239 /* bootstrapsharedcommand.cpp */,
1313                                 A7E9B67312D37EC400DA6239 /* catchallcommand.h */,
1314                                 A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */,
1315                                 A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */,
1316                                 A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */,
1317                                 A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */,
1318                                 A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */,
1319                                 A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */,
1320                                 A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */,
1321                                 A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */,
1322                                 A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */,
1323                                 A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */,
1324                                 A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */,
1325                                 A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */,
1326                                 A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */,
1327                                 A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */,
1328                                 A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */,
1329                                 A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */,
1330                                 A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */,
1331                                 A7E9B69112D37EC400DA6239 /* classifyotucommand.h */,
1332                                 A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
1333                                 A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
1334                                 A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
1335                                 A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
1336                                 A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
1337                                 A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
1338                                 A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */,
1339                                 A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */,
1340                                 A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */,
1341                                 A7E9B69D12D37EC400DA6239 /* clustercommand.h */,
1342                                 A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */,
1343                                 A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */,
1344                                 A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */,
1345                                 A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */,
1346                                 A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */,
1347                                 A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */,
1348                                 A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */,
1349                                 A7E9B6A912D37EC400DA6239 /* collectcommand.h */,
1350                                 A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */,
1351                                 A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */,
1352                                 A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */,
1353                                 A7E9B6B612D37EC400DA6239 /* consensuscommand.h */,
1354                                 A7E9B6B512D37EC400DA6239 /* consensuscommand.cpp */,
1355                                 A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */,
1356                                 A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */,
1357                                 A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */,
1358                                 A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */,
1359                                 A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */,
1360                                 A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */,
1361                                 A795840B13F13CD900F201D5 /* countgroupscommand.h */,
1362                                 A795840C13F13CD900F201D5 /* countgroupscommand.cpp */,
1363                                 A7730EFD13967241007433A3 /* countseqscommand.h */,
1364                                 A7730EFE13967241007433A3 /* countseqscommand.cpp */,
1365                                 A77EBD2C1523707F00ED407C /* createdatabasecommand.h */,
1366                                 A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */,
1367                                 A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */,
1368                                 A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */,
1369                                 A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */,
1370                                 A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */,
1371                                 A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */,
1372                                 A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */,
1373                                 A77A221D139001B600B0BE70 /* deuniquetreecommand.h */,
1374                                 A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */,
1375                                 A7E9B6CC12D37EC400DA6239 /* distancecommand.h */,
1376                                 A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */,
1377                                 A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */,
1378                                 A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */,
1379                                 A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */,
1380                                 A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */,
1381                                 A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */,
1382                                 A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */,
1383                                 A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */,
1384                                 A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */,
1385                                 A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */,
1386                                 A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */,
1387                                 A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */,
1388                                 A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
1389                                 A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
1390                                 A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */,
1391                                 A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */,
1392                                 A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */,
1393                                 A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */,
1394                                 A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */,
1395                                 A7E9B70112D37EC400DA6239 /* getotuscommand.h */,
1396                                 A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */,
1397                                 A7E9B70312D37EC400DA6239 /* getrabundcommand.h */,
1398                                 A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */,
1399                                 A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */,
1400                                 A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */,
1401                                 A7E9B70712D37EC400DA6239 /* getsabundcommand.h */,
1402                                 A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */,
1403                                 A7E9B70912D37EC400DA6239 /* getseqscommand.h */,
1404                                 A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */,
1405                                 A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */,
1406                                 A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */,
1407                                 A7E9B71B12D37EC400DA6239 /* hclustercommand.h */,
1408                                 A7E9B71A12D37EC400DA6239 /* hclustercommand.cpp */,
1409                                 A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */,
1410                                 A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */,
1411                                 A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */,
1412                                 A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */,
1413                                 A7E9B72912D37EC400DA6239 /* helpcommand.h */,
1414                                 A7E9B72812D37EC400DA6239 /* helpcommand.cpp */,
1415                                 A75790571301749D00A30DAB /* homovacommand.h */,
1416                                 A75790581301749D00A30DAB /* homovacommand.cpp */,
1417                                 A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
1418                                 A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
1419                                 A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
1420                                 A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
1421                                 A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
1422                                 A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
1423                                 A7FA10001302E096003860FE /* mantelcommand.h */,
1424                                 A7FA10011302E096003860FE /* mantelcommand.cpp */,
1425                                 A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
1426                                 A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
1427                                 A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
1428                                 A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
1429                                 A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */,
1430                                 A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */,
1431                                 A7E9B75412D37EC400DA6239 /* mergefilecommand.h */,
1432                                 A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */,
1433                                 A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */,
1434                                 A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */,
1435                                 A7E9B75812D37EC400DA6239 /* metastatscommand.h */,
1436                                 A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */,
1437                                 A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */,
1438                                 A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */,
1439                                 A7E9B76A12D37EC400DA6239 /* nocommands.h */,
1440                                 A7E9B76912D37EC400DA6239 /* nocommands.cpp */,
1441                                 A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */,
1442                                 A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
1443                                 A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
1444                                 A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
1445                                 A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */,
1446                                 A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */,
1447                                 A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
1448                                 A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
1449                                 A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */,
1450                                 A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */,
1451                                 A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */,
1452                                 A7E9B77F12D37EC400DA6239 /* parsefastaqcommand.cpp */,
1453                                 A7E9B78212D37EC400DA6239 /* parselistscommand.h */,
1454                                 A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */,
1455                                 A7E9B78612D37EC400DA6239 /* parsimonycommand.h */,
1456                                 A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */,
1457                                 A7FC486512D795D60055BC5C /* pcacommand.h */,
1458                                 A7FC486612D795D60055BC5C /* pcacommand.cpp */,
1459                                 A7E9B78812D37EC400DA6239 /* pcoacommand.h */,
1460                                 A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */,
1461                                 A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */,
1462                                 A76CDD811510F143004C8458 /* prcseqscommand.cpp */,
1463                                 A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */,
1464                                 A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */,
1465                                 A7E9B79212D37EC400DA6239 /* phylotypecommand.h */,
1466                                 A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */,
1467                                 A7E9B79612D37EC400DA6239 /* pipelinepdscommand.h */,
1468                                 A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */,
1469                                 A7E9B79812D37EC400DA6239 /* preclustercommand.h */,
1470                                 A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */,
1471                                 A7E9B7A212D37EC400DA6239 /* quitcommand.h */,
1472                                 A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */,
1473                                 A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */,
1474                                 A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */,
1475                                 A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */,
1476                                 A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */,
1477                                 A7E9B7B712D37EC400DA6239 /* readdistcommand.h */,
1478                                 A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */,
1479                                 A7E9B7BC12D37EC400DA6239 /* readotucommand.h */,
1480                                 A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */,
1481                                 A7E9B7C212D37EC400DA6239 /* readtreecommand.h */,
1482                                 A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */,
1483                                 A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */,
1484                                 A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */,
1485                                 A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */,
1486                                 A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */,
1487                                 A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */,
1488                                 A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */,
1489                                 A727864212E9E28C00F86ABA /* removerarecommand.h */,
1490                                 A727864312E9E28C00F86ABA /* removerarecommand.cpp */,
1491                                 A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */,
1492                                 A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */,
1493                                 A7E9B7CE12D37EC400DA6239 /* reversecommand.h */,
1494                                 A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */,
1495                                 A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */,
1496                                 A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */,
1497                                 A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */,
1498                                 A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */,
1499                                 A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */,
1500                                 A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */,
1501                                 A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */,
1502                                 A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */,
1503                                 A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */,
1504                                 A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */,
1505                                 A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */,
1506                                 A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */,
1507                                 A7E9B7E012D37EC400DA6239 /* setdircommand.h */,
1508                                 A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */,
1509                                 A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */,
1510                                 A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */,
1511                                 A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */,
1512                                 A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */,
1513                                 A7E9B7F312D37EC400DA6239 /* sharedcommand.h */,
1514                                 A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */,
1515                                 A7E9B82812D37EC400DA6239 /* shhhercommand.h */,
1516                                 A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */,
1517                                 A774101214695AF60098E6AC /* shhhseqscommand.h */,
1518                                 A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
1519                                 A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
1520                                 A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
1521                                 A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
1522                                 A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
1523                                 A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
1524                                 A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */,
1525                                 A7E9B85012D37EC400DA6239 /* subsamplecommand.h */,
1526                                 A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
1527                                 A7E9B85812D37EC400DA6239 /* summarycommand.h */,
1528                                 A7E9B85712D37EC400DA6239 /* summarycommand.cpp */,
1529                                 A754149514840CF7005850D1 /* summaryqualcommand.h */,
1530                                 A754149614840CF7005850D1 /* summaryqualcommand.cpp */,
1531                                 A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */,
1532                                 A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */,
1533                                 A7FFB556142CA02C004884F2 /* summarytaxcommand.h */,
1534                                 A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */,
1535                                 A7E9B85C12D37EC400DA6239 /* systemcommand.h */,
1536                                 A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */,
1537                                 A7E9B86312D37EC400DA6239 /* treegroupscommand.h */,
1538                                 A7E9B86212D37EC400DA6239 /* treegroupscommand.cpp */,
1539                                 A7E9B86912D37EC400DA6239 /* trimflowscommand.h */,
1540                                 A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */,
1541                                 A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */,
1542                                 A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */,
1543                                 A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */,
1544                                 A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */,
1545                                 A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */,
1546                                 A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */,
1547                                 A7E9B87B12D37EC400DA6239 /* venncommand.h */,
1548                                 A7E9B87A12D37EC400DA6239 /* venncommand.cpp */,
1549                         );
1550                         name = commands;
1551                         sourceTree = "<group>";
1552                 };
1553                 A7E9BA3F12D395F700DA6239 /* calculators */ = {
1554                         isa = PBXGroup;
1555                         children = (
1556                                 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */,
1557                                 A7E9B64F12D37EC300DA6239 /* ace.cpp */,
1558                                 A7E9B65012D37EC300DA6239 /* ace.h */,
1559                                 A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */,
1560                                 A7E9B65F12D37EC300DA6239 /* bergerparker.h */,
1561                                 A7E9B66612D37EC400DA6239 /* boneh.cpp */,
1562                                 A7E9B66712D37EC400DA6239 /* boneh.h */,
1563                                 A7E9B66812D37EC400DA6239 /* bootstrap.cpp */,
1564                                 A7E9B66912D37EC400DA6239 /* bootstrap.h */,
1565                                 A7E9B66C12D37EC400DA6239 /* bstick.cpp */,
1566                                 A7E9B66D12D37EC400DA6239 /* bstick.h */,
1567                                 A7E9B66E12D37EC400DA6239 /* calculator.cpp */,
1568                                 A7E9B66F12D37EC400DA6239 /* calculator.h */,
1569                                 A7E9B67012D37EC400DA6239 /* canberra.cpp */,
1570                                 A7E9B67112D37EC400DA6239 /* canberra.h */,
1571                                 A7E9B67612D37EC400DA6239 /* chao1.cpp */,
1572                                 A7E9B67712D37EC400DA6239 /* chao1.h */,
1573                                 A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */,
1574                                 A7E9B6A512D37EC400DA6239 /* cmdargs.h */,
1575                                 A7E9B6BB12D37EC400DA6239 /* coverage.cpp */,
1576                                 A7E9B6BC12D37EC400DA6239 /* coverage.h */,
1577                                 A7E9B6CA12D37EC400DA6239 /* dist.h */,
1578                                 A7E9B6C012D37EC400DA6239 /* dayhoff.h */,
1579                                 A7E9B6D512D37EC400DA6239 /* eachgapdist.h */,
1580                                 A7E9B6D612D37EC400DA6239 /* eachgapignore.h */,
1581                                 A7E9B6D712D37EC400DA6239 /* efron.cpp */,
1582                                 A7E9B6D812D37EC400DA6239 /* efron.h */,
1583                                 A7E9B6E212D37EC400DA6239 /* filters.h */,
1584                                 A7E9B6F012D37EC400DA6239 /* geom.cpp */,
1585                                 A7E9B6F112D37EC400DA6239 /* geom.h */,
1586                                 A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */,
1587                                 A7E9B70F12D37EC400DA6239 /* goodscoverage.h */,
1588                                 A7E9B71212D37EC400DA6239 /* gower.cpp */,
1589                                 A7E9B71312D37EC400DA6239 /* gower.h */,
1590                                 A7E9B71612D37EC400DA6239 /* hamming.cpp */,
1591                                 A7E9B71712D37EC400DA6239 /* hamming.h */,
1592                                 A7E9B72412D37EC400DA6239 /* heip.cpp */,
1593                                 A7E9B72512D37EC400DA6239 /* heip.h */,
1594                                 A7E9B72612D37EC400DA6239 /* hellinger.cpp */,
1595                                 A7E9B72712D37EC400DA6239 /* hellinger.h */,
1596                                 A7E9B72A12D37EC400DA6239 /* ignoregaps.h */,
1597                                 A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */,
1598                                 A7E9B73012D37EC400DA6239 /* invsimpson.h */,
1599                                 A7E9B73112D37EC400DA6239 /* jackknife.cpp */,
1600                                 A7E9B73212D37EC400DA6239 /* jackknife.h */,
1601                                 A7E9B74112D37EC400DA6239 /* logsd.cpp */,
1602                                 A7E9B74212D37EC400DA6239 /* logsd.h */,
1603                                 A7E9B74712D37EC400DA6239 /* manhattan.cpp */,
1604                                 A7E9B74812D37EC400DA6239 /* manhattan.h */,
1605                                 A7E9B74B12D37EC400DA6239 /* memchi2.cpp */,
1606                                 A7E9B74C12D37EC400DA6239 /* memchi2.h */,
1607                                 A7E9B74D12D37EC400DA6239 /* memchord.cpp */,
1608                                 A7E9B74E12D37EC400DA6239 /* memchord.h */,
1609                                 A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */,
1610                                 A7E9B75012D37EC400DA6239 /* memeuclidean.h */,
1611                                 A7E9B75112D37EC400DA6239 /* mempearson.cpp */,
1612                                 A7E9B75212D37EC400DA6239 /* mempearson.h */,
1613                                 A7E9B76D12D37EC400DA6239 /* npshannon.cpp */,
1614                                 A7E9B76E12D37EC400DA6239 /* npshannon.h */,
1615                                 A7E9B76F12D37EC400DA6239 /* nseqs.h */,
1616                                 A7E9B77112D37EC400DA6239 /* odum.cpp */,
1617                                 A7E9B77212D37EC400DA6239 /* odum.h */,
1618                                 A7E9B77312D37EC400DA6239 /* onegapdist.h */,
1619                                 A7E9B77412D37EC400DA6239 /* onegapignore.h */,
1620                                 A7E9B78412D37EC400DA6239 /* parsimony.h */,
1621                                 A7E9B78312D37EC400DA6239 /* parsimony.cpp */,
1622                                 A7E9B79912D37EC400DA6239 /* prng.cpp */,
1623                                 A7E9B79A12D37EC400DA6239 /* prng.h */,
1624                                 A7E9B79D12D37EC400DA6239 /* qstat.cpp */,
1625                                 A7E9B79E12D37EC400DA6239 /* qstat.h */,
1626                                 A7E9B7E512D37EC400DA6239 /* shannon.cpp */,
1627                                 A7E9B7E612D37EC400DA6239 /* shannon.h */,
1628                                 A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */,
1629                                 A7E9B7E812D37EC400DA6239 /* shannoneven.h */,
1630                                 A7E9B7E912D37EC400DA6239 /* sharedace.cpp */,
1631                                 A7E9B7EA12D37EC400DA6239 /* sharedace.h */,
1632                                 A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */,
1633                                 A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */,
1634                                 A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */,
1635                                 A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */,
1636                                 A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */,
1637                                 A7E9B7F112D37EC400DA6239 /* sharedchao1.h */,
1638                                 A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */,
1639                                 A7E9B7F512D37EC400DA6239 /* sharedjabund.h */,
1640                                 A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */,
1641                                 A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */,
1642                                 A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */,
1643                                 A7E9B7F912D37EC400DA6239 /* sharedjclass.h */,
1644                                 A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */,
1645                                 A7E9B7FB12D37EC400DA6239 /* sharedjest.h */,
1646                                 A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */,
1647                                 A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */,
1648                                 A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */,
1649                                 A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */,
1650                                 A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */,
1651                                 A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */,
1652                                 A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */,
1653                                 A7E9B80312D37EC400DA6239 /* sharedlennon.h */,
1654                                 A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */,
1655                                 A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */,
1656                                 A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */,
1657                                 A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */,
1658                                 A7E9B80A12D37EC400DA6239 /* sharednseqs.h */,
1659                                 A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */,
1660                                 A7E9B80C12D37EC400DA6239 /* sharedochiai.h */,
1661                                 A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */,
1662                                 A7E9B81612D37EC400DA6239 /* sharedsobs.h */,
1663                                 A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */,
1664                                 A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */,
1665                                 A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */,
1666                                 A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */,
1667                                 A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */,
1668                                 A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */,
1669                                 A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */,
1670                                 A7E9B81E12D37EC400DA6239 /* sharedsorest.h */,
1671                                 A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */,
1672                                 A7E9B82012D37EC400DA6239 /* sharedthetan.h */,
1673                                 A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */,
1674                                 A7E9B82212D37EC400DA6239 /* sharedthetayc.h */,
1675                                 A7E9B82512D37EC400DA6239 /* shen.cpp */,
1676                                 A7E9B82612D37EC400DA6239 /* shen.h */,
1677                                 A7E9B82912D37EC400DA6239 /* simpson.cpp */,
1678                                 A7E9B82A12D37EC400DA6239 /* simpson.h */,
1679                                 A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */,
1680                                 A7E9B82C12D37EC400DA6239 /* simpsoneven.h */,
1681                                 A7E9B83212D37EC400DA6239 /* smithwilson.cpp */,
1682                                 A7E9B83312D37EC400DA6239 /* smithwilson.h */,
1683                                 A7E9B83412D37EC400DA6239 /* sobs.h */,
1684                                 A7E9B83512D37EC400DA6239 /* soergel.cpp */,
1685                                 A7E9B83612D37EC400DA6239 /* soergel.h */,
1686                                 A7E9B83712D37EC400DA6239 /* solow.cpp */,
1687                                 A7E9B83812D37EC400DA6239 /* solow.h */,
1688                                 A7E9B83B12D37EC400DA6239 /* spearman.cpp */,
1689                                 A7E9B83C12D37EC400DA6239 /* spearman.h */,
1690                                 A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */,
1691                                 A7E9B83E12D37EC400DA6239 /* speciesprofile.h */,
1692                                 A7E9B84512D37EC400DA6239 /* structchi2.cpp */,
1693                                 A7E9B84612D37EC400DA6239 /* structchi2.h */,
1694                                 A7E9B84712D37EC400DA6239 /* structchord.cpp */,
1695                                 A7E9B84812D37EC400DA6239 /* structchord.h */,
1696                                 A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */,
1697                                 A7E9B84A12D37EC400DA6239 /* structeuclidean.h */,
1698                                 A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */,
1699                                 A7E9B84C12D37EC400DA6239 /* structkulczynski.h */,
1700                                 A7E9B84D12D37EC400DA6239 /* structpearson.cpp */,
1701                                 A7E9B84E12D37EC400DA6239 /* structpearson.h */,
1702                                 A7E9B86112D37EC400DA6239 /* treecalculator.h */,
1703                                 A7E9B87112D37EC400DA6239 /* unweighted.h */,
1704                                 A7E9B87012D37EC400DA6239 /* unweighted.cpp */,
1705                                 A7E9B87212D37EC400DA6239 /* uvest.cpp */,
1706                                 A7E9B87312D37EC400DA6239 /* uvest.h */,
1707                                 A7E9B87D12D37EC400DA6239 /* weighted.h */,
1708                                 A7E9B87C12D37EC400DA6239 /* weighted.cpp */,
1709                                 A7E9B87F12D37EC400DA6239 /* whittaker.cpp */,
1710                                 A7E9B88012D37EC400DA6239 /* whittaker.h */,
1711                         );
1712                         name = calculators;
1713                         sourceTree = "<group>";
1714                 };
1715                 A7E9BA4212D3960D00DA6239 /* containers */ = {
1716                         isa = PBXGroup;
1717                         children = (
1718                                 A7E9B65312D37EC300DA6239 /* alignment.cpp */,
1719                                 A7E9B65412D37EC300DA6239 /* alignment.hpp */,
1720                                 A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */,
1721                                 A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */,
1722                                 A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */,
1723                                 A7E9B65812D37EC300DA6239 /* alignmentdb.h */,
1724                                 A7E9B66212D37EC300DA6239 /* blastalign.cpp */,
1725                                 A7E9B66312D37EC400DA6239 /* blastalign.hpp */,
1726                                 A7E9B66412D37EC400DA6239 /* blastdb.cpp */,
1727                                 A7E9B66512D37EC400DA6239 /* blastdb.hpp */,
1728                                 A7E9B6BD12D37EC400DA6239 /* database.cpp */,
1729                                 A7E9B6BE12D37EC400DA6239 /* database.hpp */,
1730                                 A7E9B6BF12D37EC400DA6239 /* datavector.hpp */,
1731                                 A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
1732                                 A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */,
1733                                 A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */,
1734                                 A7E9B6DF12D37EC400DA6239 /* fastamap.h */,
1735                                 A7E9B6E812D37EC400DA6239 /* flowdata.h */,
1736                                 A7E9B6E712D37EC400DA6239 /* flowdata.cpp */,
1737                                 A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */,
1738                                 A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */,
1739                                 A7E9B71412D37EC400DA6239 /* groupmap.cpp */,
1740                                 A7E9B71512D37EC400DA6239 /* groupmap.h */,
1741                                 A7E9B73312D37EC400DA6239 /* kmer.cpp */,
1742                                 A7E9B73412D37EC400DA6239 /* kmer.hpp */,
1743                                 A7E9B73512D37EC400DA6239 /* kmerdb.cpp */,
1744                                 A7E9B73612D37EC400DA6239 /* kmerdb.hpp */,
1745                                 A7E9B73F12D37EC400DA6239 /* listvector.cpp */,
1746                                 A7E9B74012D37EC400DA6239 /* listvector.hpp */,
1747                                 A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */,
1748                                 A7E9B76012D37EC400DA6239 /* nameassignment.hpp */,
1749                                 A7E9B77712D37EC400DA6239 /* ordervector.cpp */,
1750                                 A7E9B77812D37EC400DA6239 /* ordervector.hpp */,
1751                                 A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */,
1752                                 A7E9B7A012D37EC400DA6239 /* qualityscores.h */,
1753                                 A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */,
1754                                 A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */,
1755                                 A721765513BB9F7D0014DAAE /* referencedb.h */,
1756                                 A721765613BB9F7D0014DAAE /* referencedb.cpp */,
1757                                 A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */,
1758                                 A7E9B7CC12D37EC400DA6239 /* reportfile.h */,
1759                                 A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */,
1760                                 A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */,
1761                                 A7E9B7DB12D37EC400DA6239 /* sequence.cpp */,
1762                                 A7E9B7DC12D37EC400DA6239 /* sequence.hpp */,
1763                                 A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */,
1764                                 A7E9B7DE12D37EC400DA6239 /* sequencedb.h */,
1765                                 A7F9F5CD141A5E500032F693 /* sequenceparser.h */,
1766                                 A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */,
1767                                 A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */,
1768                                 A7E9B80512D37EC400DA6239 /* sharedlistvector.h */,
1769                                 A7E9B80E12D37EC400DA6239 /* sharedordervector.h */,
1770                                 A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */,
1771                                 A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */,
1772                                 A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */,
1773                                 A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */,
1774                                 A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */,
1775                                 A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */,
1776                                 A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */,
1777                                 A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */,
1778                                 A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */,
1779                                 A7E9B85112D37EC400DA6239 /* suffixdb.cpp */,
1780                                 A7E9B85212D37EC400DA6239 /* suffixdb.hpp */,
1781                                 A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */,
1782                                 A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */,
1783                                 A7E9B85512D37EC400DA6239 /* suffixtree.cpp */,
1784                                 A7E9B85612D37EC400DA6239 /* suffixtree.hpp */,
1785                                 A7E9B85F12D37EC400DA6239 /* tree.cpp */,
1786                                 A7E9B86012D37EC400DA6239 /* tree.h */,
1787                                 A7E9B86412D37EC400DA6239 /* treemap.cpp */,
1788                                 A7E9B86512D37EC400DA6239 /* treemap.h */,
1789                                 A7E9B86612D37EC400DA6239 /* treenode.cpp */,
1790                                 A7E9B86712D37EC400DA6239 /* treenode.h */,
1791                         );
1792                         name = containers;
1793                         sourceTree = "<group>";
1794                 };
1795                 A7E9BA4512D3965600DA6239 /* chimera */ = {
1796                         isa = PBXGroup;
1797                         children = (
1798                                 A74D3644137DA7CE00332B0C /* uchime */,
1799                                 A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */,
1800                                 A7E9B65D12D37EC300DA6239 /* bellerophon.h */,
1801                                 A7E9B67412D37EC400DA6239 /* ccode.cpp */,
1802                                 A7E9B67512D37EC400DA6239 /* ccode.h */,
1803                                 A7E9B67812D37EC400DA6239 /* chimera.cpp */,
1804                                 A7E9B67912D37EC400DA6239 /* chimera.h */,
1805                                 A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */,
1806                                 A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */,
1807                                 A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */,
1808                                 A7E9B68512D37EC400DA6239 /* chimerarealigner.h */,
1809                                 A7E9B6C212D37EC400DA6239 /* decalc.h */,
1810                                 A7E9B6C112D37EC400DA6239 /* decalc.cpp */,
1811                                 A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */,
1812                                 A7E9B68912D37EC400DA6239 /* chimeraslayer.h */,
1813                                 A7E9B74612D37EC400DA6239 /* maligner.h */,
1814                                 A7E9B74512D37EC400DA6239 /* maligner.cpp */,
1815                                 A7BF221314587886000AD524 /* myPerseus.h */,
1816                                 A7BF221214587886000AD524 /* myPerseus.cpp */,
1817                                 A7E9B79312D37EC400DA6239 /* pintail.cpp */,
1818                                 A7E9B79412D37EC400DA6239 /* pintail.h */,
1819                                 A7E9B82E12D37EC400DA6239 /* slayer.cpp */,
1820                                 A7E9B82F12D37EC400DA6239 /* slayer.h */,
1821                         );
1822                         name = chimera;
1823                         sourceTree = "<group>";
1824                 };
1825                 A7E9BA4B12D3966900DA6239 /* classifier */ = {
1826                         isa = PBXGroup;
1827                         children = (
1828                                 A7E9B65A12D37EC300DA6239 /* bayesian.cpp */,
1829                                 A7E9B65B12D37EC300DA6239 /* bayesian.h */,
1830                                 A7E9B68E12D37EC400DA6239 /* classify.cpp */,
1831                                 A7E9B68F12D37EC400DA6239 /* classify.h */,
1832                                 A7E9B73812D37EC400DA6239 /* knn.h */,
1833                                 A7E9B73712D37EC400DA6239 /* knn.cpp */,
1834                                 A7E9B78912D37EC400DA6239 /* phylodiversity.cpp */,
1835                                 A7E9B78A12D37EC400DA6239 /* phylodiversity.h */,
1836                                 A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */,
1837                                 A7E9B78E12D37EC400DA6239 /* phylosummary.h */,
1838                                 A7E9B78F12D37EC400DA6239 /* phylotree.cpp */,
1839                                 A7E9B79012D37EC400DA6239 /* phylotree.h */,
1840                                 A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */,
1841                                 A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */,
1842                         );
1843                         name = classifier;
1844                         sourceTree = "<group>";
1845                 };
1846                 A7E9BA4F12D398D700DA6239 /* clearcut */ = {
1847                         isa = PBXGroup;
1848                         children = (
1849                                 A7E9B69412D37EC400DA6239 /* clearcut.cpp */,
1850                                 A7E9B69512D37EC400DA6239 /* clearcut.h */,
1851                                 A7E9B6B312D37EC400DA6239 /* common.h */,
1852                                 A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */,
1853                                 A7E9B6D012D37EC400DA6239 /* distclearcut.h */,
1854                                 A7E9B6D312D37EC400DA6239 /* dmat.cpp */,
1855                                 A7E9B6D412D37EC400DA6239 /* dmat.h */,
1856                                 A7E9B6DC12D37EC400DA6239 /* fasta.cpp */,
1857                                 A7E9B6DD12D37EC400DA6239 /* fasta.h */,
1858                                 A7E9B6FD12D37EC400DA6239 /* getopt_long.h */,
1859                                 A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */,
1860                         );
1861                         name = clearcut;
1862                         sourceTree = "<group>";
1863                 };
1864                 A7E9BA5312D39A5E00DA6239 /* read */ = {
1865                         isa = PBXGroup;
1866                         children = (
1867                                 A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */,
1868                                 A7E9B6EA12D37EC400DA6239 /* formatcolumn.h */,
1869                                 A7E9B6EB12D37EC400DA6239 /* formatmatrix.h */,
1870                                 A7E9B6EC12D37EC400DA6239 /* formatphylip.cpp */,
1871                                 A7E9B6ED12D37EC400DA6239 /* formatphylip.h */,
1872                                 A7E9B7B012D37EC400DA6239 /* readblast.cpp */,
1873                                 A7E9B7B112D37EC400DA6239 /* readblast.h */,
1874                                 A7E9B7B212D37EC400DA6239 /* readcluster.cpp */,
1875                                 A7E9B7B312D37EC400DA6239 /* readcluster.h */,
1876                                 A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */,
1877                                 A7E9B7B512D37EC400DA6239 /* readcolumn.h */,
1878                                 A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */,
1879                                 A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */,
1880                                 A7E9B7BE12D37EC400DA6239 /* readphylip.h */,
1881                                 A7E9B7BF12D37EC400DA6239 /* readtree.cpp */,
1882                                 A7E9B7C012D37EC400DA6239 /* readtree.h */,
1883                                 A713EBAA12DC7613000092AC /* readphylipvector.h */,
1884                                 A713EBAB12DC7613000092AC /* readphylipvector.cpp */,
1885                                 A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */,
1886                                 A7E9B84412D37EC400DA6239 /* splitmatrix.h */,
1887                         );
1888                         name = read;
1889                         sourceTree = "<group>";
1890                 };
1891                 A7E9BA5612D39BD800DA6239 /* metastats */ = {
1892                         isa = PBXGroup;
1893                         children = (
1894                                 A7D161E7149F7F50000523E8 /* fortran */,
1895                                 A79234D513C74BF6002B08E2 /* mothurfisher.h */,
1896                                 A79234D613C74BF6002B08E2 /* mothurfisher.cpp */,
1897                                 A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */,
1898                                 A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */,
1899                                 A74A9A9D148E881E00AB5E3E /* spline.h */,
1900                                 A74A9A9E148E881E00AB5E3E /* spline.cpp */,
1901                         );
1902                         name = metastats;
1903                         sourceTree = "<group>";
1904                 };
1905                 C6A0FF2B0290797F04C91782 /* Documentation */ = {
1906                         isa = PBXGroup;
1907                         children = (
1908                                 C6A0FF2C0290799A04C91782 /* mothur.1 */,
1909                         );
1910                         name = Documentation;
1911                         sourceTree = "<group>";
1912                 };
1913 /* End PBXGroup section */
1914
1915 /* Begin PBXNativeTarget section */
1916                 8DD76FA90486AB0100D96B5E /* Mothur */ = {
1917                         isa = PBXNativeTarget;
1918                         buildConfigurationList = 1DEB928508733DD80010E9CD /* Build configuration list for PBXNativeTarget "Mothur" */;
1919                         buildPhases = (
1920                                 8DD76FAB0486AB0100D96B5E /* Sources */,
1921                                 8DD76FAD0486AB0100D96B5E /* Frameworks */,
1922                                 8DD76FAF0486AB0100D96B5E /* CopyFiles */,
1923                         );
1924                         buildRules = (
1925                                 A7D162CB149F96CA000523E8 /* PBXBuildRule */,
1926                         );
1927                         dependencies = (
1928                         );
1929                         name = Mothur;
1930                         productInstallPath = "$(HOME)/bin";
1931                         productName = mothur;
1932                         productReference = 8DD76FB20486AB0100D96B5E /* Mothur */;
1933                         productType = "com.apple.product-type.tool";
1934                 };
1935 /* End PBXNativeTarget section */
1936
1937 /* Begin PBXProject section */
1938                 08FB7793FE84155DC02AAC07 /* Project object */ = {
1939                         isa = PBXProject;
1940                         attributes = {
1941                                 LastUpgradeCheck = 0420;
1942                                 ORGANIZATIONNAME = "Schloss Lab";
1943                         };
1944                         buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
1945                         compatibilityVersion = "Xcode 3.2";
1946                         developmentRegion = English;
1947                         hasScannedForEncodings = 1;
1948                         knownRegions = (
1949                                 English,
1950                                 Japanese,
1951                                 French,
1952                                 German,
1953                         );
1954                         mainGroup = 08FB7794FE84155DC02AAC07 /* mothur */;
1955                         projectDirPath = "";
1956                         projectRoot = "";
1957                         targets = (
1958                                 8DD76FA90486AB0100D96B5E /* Mothur */,
1959                         );
1960                 };
1961 /* End PBXProject section */
1962
1963 /* Begin PBXSourcesBuildPhase section */
1964                 8DD76FAB0486AB0100D96B5E /* Sources */ = {
1965                         isa = PBXSourcesBuildPhase;
1966                         buildActionMask = 2147483647;
1967                         files = (
1968                                 A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */,
1969                                 A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */,
1970                                 A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */,
1971                                 A7E9B88412D37EC400DA6239 /* alignmentcell.cpp in Sources */,
1972                                 A7E9B88512D37EC400DA6239 /* alignmentdb.cpp in Sources */,
1973                                 A7E9B88612D37EC400DA6239 /* averagelinkage.cpp in Sources */,
1974                                 A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */,
1975                                 A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */,
1976                                 A7E9B88912D37EC400DA6239 /* bergerparker.cpp in Sources */,
1977                                 A7E9B88A12D37EC400DA6239 /* binsequencecommand.cpp in Sources */,
1978                                 A7E9B88B12D37EC400DA6239 /* blastalign.cpp in Sources */,
1979                                 A7E9B88C12D37EC400DA6239 /* blastdb.cpp in Sources */,
1980                                 A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */,
1981                                 A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */,
1982                                 A7E9B88F12D37EC400DA6239 /* bootstrapsharedcommand.cpp in Sources */,
1983                                 A7E9B89012D37EC400DA6239 /* bstick.cpp in Sources */,
1984                                 A7E9B89112D37EC400DA6239 /* calculator.cpp in Sources */,
1985                                 A7E9B89212D37EC400DA6239 /* canberra.cpp in Sources */,
1986                                 A7E9B89312D37EC400DA6239 /* catchallcommand.cpp in Sources */,
1987                                 A7E9B89412D37EC400DA6239 /* ccode.cpp in Sources */,
1988                                 A7E9B89512D37EC400DA6239 /* chao1.cpp in Sources */,
1989                                 A7E9B89612D37EC400DA6239 /* chimera.cpp in Sources */,
1990                                 A7E9B89712D37EC400DA6239 /* chimerabellerophoncommand.cpp in Sources */,
1991                                 A7E9B89812D37EC400DA6239 /* chimeraccodecommand.cpp in Sources */,
1992                                 A7E9B89912D37EC400DA6239 /* chimeracheckcommand.cpp in Sources */,
1993                                 A7E9B89A12D37EC400DA6239 /* chimeracheckrdp.cpp in Sources */,
1994                                 A7E9B89B12D37EC400DA6239 /* chimerapintailcommand.cpp in Sources */,
1995                                 A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */,
1996                                 A7E9B89E12D37EC400DA6239 /* chimeraslayer.cpp in Sources */,
1997                                 A7E9B89F12D37EC400DA6239 /* chimeraslayercommand.cpp in Sources */,
1998                                 A7E9B8A012D37EC400DA6239 /* chopseqscommand.cpp in Sources */,
1999                                 A7E9B8A112D37EC400DA6239 /* classify.cpp in Sources */,
2000                                 A7E9B8A212D37EC400DA6239 /* classifyotucommand.cpp in Sources */,
2001                                 A7E9B8A312D37EC400DA6239 /* classifyseqscommand.cpp in Sources */,
2002                                 A7E9B8A412D37EC400DA6239 /* clearcut.cpp in Sources */,
2003                                 A7E9B8A512D37EC400DA6239 /* clearcutcommand.cpp in Sources */,
2004                                 A7E9B8A612D37EC400DA6239 /* cluster.cpp in Sources */,
2005                                 A7E9B8A712D37EC400DA6239 /* clusterclassic.cpp in Sources */,
2006                                 A7E9B8A812D37EC400DA6239 /* clustercommand.cpp in Sources */,
2007                                 A7E9B8A912D37EC400DA6239 /* clusterdoturcommand.cpp in Sources */,
2008                                 A7E9B8AA12D37EC400DA6239 /* clusterfragmentscommand.cpp in Sources */,
2009                                 A7E9B8AB12D37EC400DA6239 /* clustersplitcommand.cpp in Sources */,
2010                                 A7E9B8AC12D37EC400DA6239 /* cmdargs.cpp in Sources */,
2011                                 A7E9B8AD12D37EC400DA6239 /* collect.cpp in Sources */,
2012                                 A7E9B8AE12D37EC400DA6239 /* collectcommand.cpp in Sources */,
2013                                 A7E9B8AF12D37EC400DA6239 /* collectsharedcommand.cpp in Sources */,
2014                                 A7E9B8B012D37EC400DA6239 /* commandfactory.cpp in Sources */,
2015                                 A7E9B8B112D37EC400DA6239 /* commandoptionparser.cpp in Sources */,
2016                                 A7E9B8B212D37EC400DA6239 /* completelinkage.cpp in Sources */,
2017                                 A7E9B8B312D37EC400DA6239 /* consensuscommand.cpp in Sources */,
2018                                 A7E9B8B412D37EC400DA6239 /* consensusseqscommand.cpp in Sources */,
2019                                 A7E9B8B512D37EC400DA6239 /* corraxescommand.cpp in Sources */,
2020                                 A7E9B8B612D37EC400DA6239 /* coverage.cpp in Sources */,
2021                                 A7E9B8B712D37EC400DA6239 /* database.cpp in Sources */,
2022                                 A7E9B8B812D37EC400DA6239 /* decalc.cpp in Sources */,
2023                                 A7E9B8B912D37EC400DA6239 /* deconvolutecommand.cpp in Sources */,
2024                                 A7E9B8BA12D37EC400DA6239 /* degapseqscommand.cpp in Sources */,
2025                                 A7E9B8BB12D37EC400DA6239 /* deuniqueseqscommand.cpp in Sources */,
2026                                 A7E9B8BC12D37EC400DA6239 /* distancecommand.cpp in Sources */,
2027                                 A7E9B8BD12D37EC400DA6239 /* distancedb.cpp in Sources */,
2028                                 A7E9B8BE12D37EC400DA6239 /* distclearcut.cpp in Sources */,
2029                                 A7E9B8BF12D37EC400DA6239 /* dlibshuff.cpp in Sources */,
2030                                 A7E9B8C012D37EC400DA6239 /* dmat.cpp in Sources */,
2031                                 A7E9B8C112D37EC400DA6239 /* efron.cpp in Sources */,
2032                                 A7E9B8C212D37EC400DA6239 /* engine.cpp in Sources */,
2033                                 A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */,
2034                                 A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */,
2035                                 A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */,
2036                                 A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */,
2037                                 A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */,
2038                                 A7E9B8C912D37EC400DA6239 /* formatcolumn.cpp in Sources */,
2039                                 A7E9B8CA12D37EC400DA6239 /* formatphylip.cpp in Sources */,
2040                                 A7E9B8CB12D37EC400DA6239 /* fullmatrix.cpp in Sources */,
2041                                 A7E9B8CC12D37EC400DA6239 /* geom.cpp in Sources */,
2042                                 A7E9B8CD12D37EC400DA6239 /* getgroupcommand.cpp in Sources */,
2043                                 A7E9B8CE12D37EC400DA6239 /* getgroupscommand.cpp in Sources */,
2044                                 A7E9B8CF12D37EC400DA6239 /* getlabelcommand.cpp in Sources */,
2045                                 A7E9B8D012D37EC400DA6239 /* getlineagecommand.cpp in Sources */,
2046                                 A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */,
2047                                 A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */,
2048                                 A7E9B8D312D37EC400DA6239 /* getoturepcommand.cpp in Sources */,
2049                                 A7E9B8D412D37EC400DA6239 /* getotuscommand.cpp in Sources */,
2050                                 A7E9B8D512D37EC400DA6239 /* getrabundcommand.cpp in Sources */,
2051                                 A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */,
2052                                 A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */,
2053                                 A7E9B8D812D37EC400DA6239 /* getseqscommand.cpp in Sources */,
2054                                 A7E9B8D912D37EC400DA6239 /* getsharedotucommand.cpp in Sources */,
2055                                 A7E9B8DB12D37EC400DA6239 /* goodscoverage.cpp in Sources */,
2056                                 A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */,
2057                                 A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */,
2058                                 A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */,
2059                                 A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */,
2060                                 A7E9B8E012D37EC400DA6239 /* hcluster.cpp in Sources */,
2061                                 A7E9B8E112D37EC400DA6239 /* hclustercommand.cpp in Sources */,
2062                                 A7E9B8E212D37EC400DA6239 /* heatmap.cpp in Sources */,
2063                                 A7E9B8E312D37EC400DA6239 /* heatmapcommand.cpp in Sources */,
2064                                 A7E9B8E412D37EC400DA6239 /* heatmapsim.cpp in Sources */,
2065                                 A7E9B8E512D37EC400DA6239 /* heatmapsimcommand.cpp in Sources */,
2066                                 A7E9B8E612D37EC400DA6239 /* heip.cpp in Sources */,
2067                                 A7E9B8E712D37EC400DA6239 /* hellinger.cpp in Sources */,
2068                                 A7E9B8E812D37EC400DA6239 /* helpcommand.cpp in Sources */,
2069                                 A7E9B8E912D37EC400DA6239 /* indicatorcommand.cpp in Sources */,
2070                                 A7E9B8EA12D37EC400DA6239 /* inputdata.cpp in Sources */,
2071                                 A7E9B8EB12D37EC400DA6239 /* invsimpson.cpp in Sources */,
2072                                 A7E9B8EC12D37EC400DA6239 /* jackknife.cpp in Sources */,
2073                                 A7E9B8ED12D37EC400DA6239 /* kmer.cpp in Sources */,
2074                                 A7E9B8EE12D37EC400DA6239 /* kmerdb.cpp in Sources */,
2075                                 A7E9B8EF12D37EC400DA6239 /* knn.cpp in Sources */,
2076                                 A7E9B8F012D37EC400DA6239 /* libshuff.cpp in Sources */,
2077                                 A7E9B8F112D37EC400DA6239 /* libshuffcommand.cpp in Sources */,
2078                                 A7E9B8F212D37EC400DA6239 /* listseqscommand.cpp in Sources */,
2079                                 A7E9B8F312D37EC400DA6239 /* listvector.cpp in Sources */,
2080                                 A7E9B8F412D37EC400DA6239 /* logsd.cpp in Sources */,
2081                                 A7E9B8F512D37EC400DA6239 /* makegroupcommand.cpp in Sources */,
2082                                 A7E9B8F612D37EC400DA6239 /* maligner.cpp in Sources */,
2083                                 A7E9B8F712D37EC400DA6239 /* manhattan.cpp in Sources */,
2084                                 A7E9B8F812D37EC400DA6239 /* matrixoutputcommand.cpp in Sources */,
2085                                 A7E9B8F912D37EC400DA6239 /* memchi2.cpp in Sources */,
2086                                 A7E9B8FA12D37EC400DA6239 /* memchord.cpp in Sources */,
2087                                 A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */,
2088                                 A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */,
2089                                 A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */,
2090                                 A7E9B8FF12D37EC400DA6239 /* metastatscommand.cpp in Sources */,
2091                                 A7E9B90012D37EC400DA6239 /* mgclustercommand.cpp in Sources */,
2092                                 A7E9B90112D37EC400DA6239 /* mothur.cpp in Sources */,
2093                                 A7E9B90212D37EC400DA6239 /* mothurout.cpp in Sources */,
2094                                 A7E9B90312D37EC400DA6239 /* nameassignment.cpp in Sources */,
2095                                 A7E9B90412D37EC400DA6239 /* nast.cpp in Sources */,
2096                                 A7E9B90512D37EC400DA6239 /* nastreport.cpp in Sources */,
2097                                 A7E9B90612D37EC400DA6239 /* needlemanoverlap.cpp in Sources */,
2098                                 A7E9B90712D37EC400DA6239 /* noalign.cpp in Sources */,
2099                                 A7E9B90812D37EC400DA6239 /* nocommands.cpp in Sources */,
2100                                 A7E9B90912D37EC400DA6239 /* normalizesharedcommand.cpp in Sources */,
2101                                 A7E9B90A12D37EC400DA6239 /* npshannon.cpp in Sources */,
2102                                 A7E9B90B12D37EC400DA6239 /* odum.cpp in Sources */,
2103                                 A7E9B90C12D37EC400DA6239 /* optionparser.cpp in Sources */,
2104                                 A7E9B90D12D37EC400DA6239 /* ordervector.cpp in Sources */,
2105                                 A7E9B90E12D37EC400DA6239 /* otuhierarchycommand.cpp in Sources */,
2106                                 A7E9B90F12D37EC400DA6239 /* overlap.cpp in Sources */,
2107                                 A7E9B91012D37EC400DA6239 /* pairwiseseqscommand.cpp in Sources */,
2108                                 A7E9B91112D37EC400DA6239 /* parsefastaqcommand.cpp in Sources */,
2109                                 A7E9B91212D37EC400DA6239 /* parselistscommand.cpp in Sources */,
2110                                 A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */,
2111                                 A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */,
2112                                 A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */,
2113                                 A7E9B91612D37EC400DA6239 /* phylodiversity.cpp in Sources */,
2114                                 A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */,
2115                                 A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */,
2116                                 A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */,
2117                                 A7E9B91A12D37EC400DA6239 /* phylotypecommand.cpp in Sources */,
2118                                 A7E9B91B12D37EC400DA6239 /* pintail.cpp in Sources */,
2119                                 A7E9B91C12D37EC400DA6239 /* pipelinepdscommand.cpp in Sources */,
2120                                 A7E9B91D12D37EC400DA6239 /* preclustercommand.cpp in Sources */,
2121                                 A7E9B91E12D37EC400DA6239 /* prng.cpp in Sources */,
2122                                 A7E9B91F12D37EC400DA6239 /* progress.cpp in Sources */,
2123                                 A7E9B92012D37EC400DA6239 /* qstat.cpp in Sources */,
2124                                 A7E9B92112D37EC400DA6239 /* qualityscores.cpp in Sources */,
2125                                 A7E9B92212D37EC400DA6239 /* quitcommand.cpp in Sources */,
2126                                 A7E9B92312D37EC400DA6239 /* rabundvector.cpp in Sources */,
2127                                 A7E9B92412D37EC400DA6239 /* rarecalc.cpp in Sources */,
2128                                 A7E9B92512D37EC400DA6239 /* raredisplay.cpp in Sources */,
2129                                 A7E9B92612D37EC400DA6239 /* rarefact.cpp in Sources */,
2130                                 A7E9B92712D37EC400DA6239 /* rarefactcommand.cpp in Sources */,
2131                                 A7E9B92812D37EC400DA6239 /* rarefactsharedcommand.cpp in Sources */,
2132                                 A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */,
2133                                 A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */,
2134                                 A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */,
2135                                 A7E9B92C12D37EC400DA6239 /* readdistcommand.cpp in Sources */,
2136                                 A7E9B92E12D37EC400DA6239 /* readotucommand.cpp in Sources */,
2137                                 A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */,
2138                                 A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */,
2139                                 A7E9B93112D37EC400DA6239 /* readtreecommand.cpp in Sources */,
2140                                 A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */,
2141                                 A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */,
2142                                 A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */,
2143                                 A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */,
2144                                 A7E9B93612D37EC400DA6239 /* reportfile.cpp in Sources */,
2145                                 A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */,
2146                                 A7E9B93812D37EC400DA6239 /* sabundvector.cpp in Sources */,
2147                                 A7E9B93912D37EC400DA6239 /* screenseqscommand.cpp in Sources */,
2148                                 A7E9B93A12D37EC400DA6239 /* secondarystructurecommand.cpp in Sources */,
2149                                 A7E9B93B12D37EC400DA6239 /* sensspeccommand.cpp in Sources */,
2150                                 A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */,
2151                                 A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */,
2152                                 A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */,
2153                                 A7E9B93F12D37EC400DA6239 /* sequencedb.cpp in Sources */,
2154                                 A7E9B94012D37EC400DA6239 /* setdircommand.cpp in Sources */,
2155                                 A7E9B94112D37EC400DA6239 /* setlogfilecommand.cpp in Sources */,
2156                                 A7E9B94212D37EC400DA6239 /* sffinfocommand.cpp in Sources */,
2157                                 A7E9B94312D37EC400DA6239 /* shannon.cpp in Sources */,
2158                                 A7E9B94412D37EC400DA6239 /* shannoneven.cpp in Sources */,
2159                                 A7E9B94512D37EC400DA6239 /* sharedace.cpp in Sources */,
2160                                 A7E9B94612D37EC400DA6239 /* sharedanderbergs.cpp in Sources */,
2161                                 A7E9B94712D37EC400DA6239 /* sharedbraycurtis.cpp in Sources */,
2162                                 A7E9B94812D37EC400DA6239 /* sharedchao1.cpp in Sources */,
2163                                 A7E9B94912D37EC400DA6239 /* sharedcommand.cpp in Sources */,
2164                                 A7E9B94A12D37EC400DA6239 /* sharedjabund.cpp in Sources */,
2165                                 A7E9B94B12D37EC400DA6239 /* sharedjackknife.cpp in Sources */,
2166                                 A7E9B94C12D37EC400DA6239 /* sharedjclass.cpp in Sources */,
2167                                 A7E9B94D12D37EC400DA6239 /* sharedjest.cpp in Sources */,
2168                                 A7E9B94E12D37EC400DA6239 /* sharedkstest.cpp in Sources */,
2169                                 A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */,
2170                                 A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */,
2171                                 A7E9B95112D37EC400DA6239 /* sharedlennon.cpp in Sources */,
2172                                 A7E9B95212D37EC400DA6239 /* sharedlistvector.cpp in Sources */,
2173                                 A7E9B95312D37EC400DA6239 /* sharedmarczewski.cpp in Sources */,
2174                                 A7E9B95412D37EC400DA6239 /* sharedmorisitahorn.cpp in Sources */,
2175                                 A7E9B95512D37EC400DA6239 /* sharedochiai.cpp in Sources */,
2176                                 A7E9B95612D37EC400DA6239 /* sharedordervector.cpp in Sources */,
2177                                 A7E9B95712D37EC400DA6239 /* sharedrabundfloatvector.cpp in Sources */,
2178                                 A7E9B95812D37EC400DA6239 /* sharedrabundvector.cpp in Sources */,
2179                                 A7E9B95912D37EC400DA6239 /* sharedsabundvector.cpp in Sources */,
2180                                 A7E9B95A12D37EC400DA6239 /* sharedsobs.cpp in Sources */,
2181                                 A7E9B95B12D37EC400DA6239 /* sharedsobscollectsummary.cpp in Sources */,
2182                                 A7E9B95C12D37EC400DA6239 /* sharedsorabund.cpp in Sources */,
2183                                 A7E9B95D12D37EC400DA6239 /* sharedsorclass.cpp in Sources */,
2184                                 A7E9B95E12D37EC400DA6239 /* sharedsorest.cpp in Sources */,
2185                                 A7E9B95F12D37EC400DA6239 /* sharedthetan.cpp in Sources */,
2186                                 A7E9B96012D37EC400DA6239 /* sharedthetayc.cpp in Sources */,
2187                                 A7E9B96112D37EC400DA6239 /* sharedutilities.cpp in Sources */,
2188                                 A7E9B96212D37EC400DA6239 /* shen.cpp in Sources */,
2189                                 A7E9B96312D37EC400DA6239 /* shhhercommand.cpp in Sources */,
2190                                 A7E9B96412D37EC400DA6239 /* simpson.cpp in Sources */,
2191                                 A7E9B96512D37EC400DA6239 /* simpsoneven.cpp in Sources */,
2192                                 A7E9B96612D37EC400DA6239 /* singlelinkage.cpp in Sources */,
2193                                 A7E9B96712D37EC400DA6239 /* slayer.cpp in Sources */,
2194                                 A7E9B96812D37EC400DA6239 /* slibshuff.cpp in Sources */,
2195                                 A7E9B96912D37EC400DA6239 /* smithwilson.cpp in Sources */,
2196                                 A7E9B96A12D37EC400DA6239 /* soergel.cpp in Sources */,
2197                                 A7E9B96B12D37EC400DA6239 /* solow.cpp in Sources */,
2198                                 A7E9B96C12D37EC400DA6239 /* sparsematrix.cpp in Sources */,
2199                                 A7E9B96D12D37EC400DA6239 /* spearman.cpp in Sources */,
2200                                 A7E9B96E12D37EC400DA6239 /* speciesprofile.cpp in Sources */,
2201                                 A7E9B96F12D37EC400DA6239 /* splitabundcommand.cpp in Sources */,
2202                                 A7E9B97012D37EC400DA6239 /* splitgroupscommand.cpp in Sources */,
2203                                 A7E9B97112D37EC400DA6239 /* splitmatrix.cpp in Sources */,
2204                                 A7E9B97212D37EC400DA6239 /* structchi2.cpp in Sources */,
2205                                 A7E9B97312D37EC400DA6239 /* structchord.cpp in Sources */,
2206                                 A7E9B97412D37EC400DA6239 /* structeuclidean.cpp in Sources */,
2207                                 A7E9B97512D37EC400DA6239 /* structkulczynski.cpp in Sources */,
2208                                 A7E9B97612D37EC400DA6239 /* structpearson.cpp in Sources */,
2209                                 A7E9B97712D37EC400DA6239 /* subsamplecommand.cpp in Sources */,
2210                                 A7E9B97812D37EC400DA6239 /* suffixdb.cpp in Sources */,
2211                                 A7E9B97912D37EC400DA6239 /* suffixnodes.cpp in Sources */,
2212                                 A7E9B97A12D37EC400DA6239 /* suffixtree.cpp in Sources */,
2213                                 A7E9B97B12D37EC400DA6239 /* summarycommand.cpp in Sources */,
2214                                 A7E9B97C12D37EC400DA6239 /* summarysharedcommand.cpp in Sources */,
2215                                 A7E9B97D12D37EC400DA6239 /* systemcommand.cpp in Sources */,
2216                                 A7E9B97E12D37EC400DA6239 /* taxonomyequalizer.cpp in Sources */,
2217                                 A7E9B97F12D37EC400DA6239 /* tree.cpp in Sources */,
2218                                 A7E9B98012D37EC400DA6239 /* treegroupscommand.cpp in Sources */,
2219                                 A7E9B98112D37EC400DA6239 /* treemap.cpp in Sources */,
2220                                 A7E9B98212D37EC400DA6239 /* treenode.cpp in Sources */,
2221                                 A7E9B98312D37EC400DA6239 /* trimflowscommand.cpp in Sources */,
2222                                 A7E9B98412D37EC400DA6239 /* trimseqscommand.cpp in Sources */,
2223                                 A7E9B98512D37EC400DA6239 /* unifracunweightedcommand.cpp in Sources */,
2224                                 A7E9B98612D37EC400DA6239 /* unifracweightedcommand.cpp in Sources */,
2225                                 A7E9B98712D37EC400DA6239 /* unweighted.cpp in Sources */,
2226                                 A7E9B98812D37EC400DA6239 /* uvest.cpp in Sources */,
2227                                 A7E9B98912D37EC400DA6239 /* validcalculator.cpp in Sources */,
2228                                 A7E9B98A12D37EC400DA6239 /* validparameter.cpp in Sources */,
2229                                 A7E9B98B12D37EC400DA6239 /* venn.cpp in Sources */,
2230                                 A7E9B98C12D37EC400DA6239 /* venncommand.cpp in Sources */,
2231                                 A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */,
2232                                 A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */,
2233                                 A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */,
2234                                 A70332B712D3A13400761E33 /* makefile in Sources */,
2235                                 A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */,
2236                                 A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */,
2237                                 A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */,
2238                                 A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */,
2239                                 A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */,
2240                                 A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */,
2241                                 7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */,
2242                                 A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */,
2243                                 A75790591301749D00A30DAB /* homovacommand.cpp in Sources */,
2244                                 A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */,
2245                                 A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */,
2246                                 A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */,
2247                                 A7FE7C401330EA1000F7B327 /* getcurrentcommand.cpp in Sources */,
2248                                 A7FE7E6D13311EA400F7B327 /* setcurrentcommand.cpp in Sources */,
2249                                 A778FE6B134CA6CA00C0BA33 /* getcommandinfocommand.cpp in Sources */,
2250                                 A74D3687137DAB8300332B0C /* addtargets2.cpp in Sources */,
2251                                 A74D3688137DAB8400332B0C /* alignchime.cpp in Sources */,
2252                                 A74D3689137DAB8400332B0C /* alignchimel.cpp in Sources */,
2253                                 A74D368A137DAB8400332B0C /* alnparams.cpp in Sources */,
2254                                 A74D368B137DAB8400332B0C /* alpha.cpp in Sources */,
2255                                 A74D368C137DAB8400332B0C /* alpha2.cpp in Sources */,
2256                                 A74D368D137DAB8400332B0C /* fractid.cpp in Sources */,
2257                                 A74D368E137DAB8400332B0C /* getparents.cpp in Sources */,
2258                                 A74D368F137DAB8400332B0C /* globalalign2.cpp in Sources */,
2259                                 A74D3690137DAB8400332B0C /* make3way.cpp in Sources */,
2260                                 A74D3691137DAB8400332B0C /* mx.cpp in Sources */,
2261                                 A74D3692137DAB8400332B0C /* myutils.cpp in Sources */,
2262                                 A74D3693137DAB8400332B0C /* path.cpp in Sources */,
2263                                 A74D3694137DAB8400332B0C /* searchchime.cpp in Sources */,
2264                                 A74D3695137DAB8400332B0C /* seqdb.cpp in Sources */,
2265                                 A74D3696137DAB8400332B0C /* setnucmx.cpp in Sources */,
2266                                 A74D3697137DAB8400332B0C /* sfasta.cpp in Sources */,
2267                                 A74D3698137DAB8400332B0C /* tracebackbit.cpp in Sources */,
2268                                 A74D3699137DAB8400332B0C /* uchime_main.cpp in Sources */,
2269                                 A74D369A137DAB8400332B0C /* usort.cpp in Sources */,
2270                                 A74D369B137DAB8400332B0C /* viterbifast.cpp in Sources */,
2271                                 A74D369C137DAB8400332B0C /* writechhit.cpp in Sources */,
2272                                 A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */,
2273                                 A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */,
2274                                 A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */,
2275                                 A721765713BB9F7D0014DAAE /* referencedb.cpp in Sources */,
2276                                 A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */,
2277                                 A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */,
2278                                 A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */,
2279                                 A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */,
2280                                 A7FF19F2140FFDA500AD216D /* trimoligos.cpp in Sources */,
2281                                 A7F9F5CF141A5E500032F693 /* sequenceparser.cpp in Sources */,
2282                                 A7FFB558142CA02C004884F2 /* summarytaxcommand.cpp in Sources */,
2283                                 A7BF221414587886000AD524 /* myPerseus.cpp in Sources */,
2284                                 A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */,
2285                                 A774101414695AF60098E6AC /* shhhseqscommand.cpp in Sources */,
2286                                 A774104814696F320098E6AC /* myseqdist.cpp in Sources */,
2287                                 A77410F614697C300098E6AC /* seqnoise.cpp in Sources */,
2288                                 A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */,
2289                                 A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */,
2290                                 A7FA2AC714A0E881007C09A6 /* bsplvb.f in Sources */,
2291                                 A7FA2AC814A0E881007C09A6 /* bsplvd.f in Sources */,
2292                                 A7FA2AC914A0E881007C09A6 /* bvalue.f in Sources */,
2293                                 A7FA2ACA14A0E881007C09A6 /* daxpy.f in Sources */,
2294                                 A7FA2ACB14A0E881007C09A6 /* ddot.f in Sources */,
2295                                 A7FA2ACC14A0E881007C09A6 /* dpbfa.f in Sources */,
2296                                 A7FA2ACD14A0E881007C09A6 /* dpbsl.f in Sources */,
2297                                 A7FA2ACE14A0E881007C09A6 /* interv.f in Sources */,
2298                                 A7FA2ACF14A0E881007C09A6 /* sgram.f in Sources */,
2299                                 A7FA2AD014A0E881007C09A6 /* sinerp.f in Sources */,
2300                                 A7FA2AD114A0E881007C09A6 /* stxwx.f in Sources */,
2301                                 A7FA2B1614A0EBEA007C09A6 /* sslvrg.f in Sources */,
2302                                 A7FA2B5B14A0F0C2007C09A6 /* intrv.f in Sources */,
2303                                 A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */,
2304                                 A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */,
2305                                 A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */,
2306                                 A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */,
2307                                 A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */,
2308                                 A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */,
2309                                 A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */,
2310                                 A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */,
2311                         );
2312                         runOnlyForDeploymentPostprocessing = 0;
2313                 };
2314 /* End PBXSourcesBuildPhase section */
2315
2316 /* Begin XCBuildConfiguration section */
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2318                         isa = XCBuildConfiguration;
2319                         buildSettings = {
2320                                 ALWAYS_SEARCH_USER_PATHS = NO;
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2322                                 GCC_DYNAMIC_NO_PIC = NO;
2323                                 GCC_MODEL_TUNING = G5;
2324                                 GCC_OPTIMIZATION_LEVEL = 0;
2325                                 INSTALL_PATH = /usr/local/bin;
2326                                 PRODUCT_NAME = Mothur;
2327                                 SDKROOT = macosx10.6;
2328                         };
2329                         name = Debug;
2330                 };
2331                 1DEB928708733DD80010E9CD /* Release */ = {
2332                         isa = XCBuildConfiguration;
2333                         buildSettings = {
2334                                 ALWAYS_SEARCH_USER_PATHS = NO;
2335                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
2336                                 DEPLOYMENT_LOCATION = YES;
2337                                 GCC_MODEL_TUNING = G5;
2338                                 GCC_WARN_UNUSED_VALUE = YES;
2339                                 INSTALL_PATH = ./;
2340                                 PRODUCT_NAME = Mothur;
2341                         };
2342                         name = Release;
2343                 };
2344                 1DEB928A08733DD80010E9CD /* Debug */ = {
2345                         isa = XCBuildConfiguration;
2346                         buildSettings = {
2347                                 ARCHS = "$(ARCHS_STANDARD_64_BIT)";
2348                                 DEPLOYMENT_LOCATION = NO;
2349                                 GCC_C_LANGUAGE_STANDARD = gnu99;
2350                                 GCC_ENABLE_SSE3_EXTENSIONS = NO;
2351                                 GCC_ENABLE_SSE41_EXTENSIONS = NO;
2352                                 GCC_ENABLE_SSE42_EXTENSIONS = NO;
2353                                 GCC_OPTIMIZATION_LEVEL = 0;
2354                                 GCC_PREPROCESSOR_DEFINITIONS = (
2355                                         "MOTHUR_FILES=\"\\\"../release\\\"\"",
2356                                         "VERSION=\"\\\"1.24.0\\\"\"",
2357                                         "RELEASE_DATE=\"\\\"3/12/2012\\\"\"",
2358                                 );
2359                                 "GCC_VERSION[arch=*]" = "";
2360                                 GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
2361                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
2362                                 GCC_WARN_UNUSED_VARIABLE = YES;
2363                                 HEADER_SEARCH_PATHS = "";
2364                                 INSTALL_PATH = "";
2365                                 MACH_O_TYPE = mh_execute;
2366                                 ONLY_ACTIVE_ARCH = YES;
2367                                 OTHER_CPLUSPLUSFLAGS = (
2368                                         "-DBIT_VERSION",
2369                                         "-DUSE_READLINE",
2370                                         "$(OTHER_CFLAGS)",
2371                                 );
2372                                 OTHER_LDFLAGS = (
2373                                         "-lncurses",
2374                                         "-lreadline",
2375                                 );
2376                                 SDKROOT = macosx10.6;
2377                                 USER_HEADER_SEARCH_PATHS = "";
2378                         };
2379                         name = Debug;
2380                 };
2381                 1DEB928B08733DD80010E9CD /* Release */ = {
2382                         isa = XCBuildConfiguration;
2383                         buildSettings = {
2384                                 ARCHS = "$(ARCHS_STANDARD_64_BIT)";
2385                                 DEPLOYMENT_LOCATION = NO;
2386                                 GCC_C_LANGUAGE_STANDARD = gnu99;
2387                                 GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
2388                                 GCC_MODEL_TUNING = "";
2389                                 GCC_OPTIMIZATION_LEVEL = 0;
2390                                 GCC_PREPROCESSOR_DEFINITIONS = (
2391                                         "VERSION=\"\\\"1.24.0\\\"\"",
2392                                         "RELEASE_DATE=\"\\\"3/12/2012\\\"\"",
2393                                 );
2394                                 GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
2395                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
2396                                 GCC_WARN_MISSING_PARENTHESES = YES;
2397                                 GCC_WARN_MULTIPLE_DEFINITION_TYPES_FOR_SELECTOR = YES;
2398                                 GCC_WARN_UNUSED_FUNCTION = YES;
2399                                 GCC_WARN_UNUSED_PARAMETER = YES;
2400                                 GCC_WARN_UNUSED_VALUE = YES;
2401                                 GCC_WARN_UNUSED_VARIABLE = YES;
2402                                 INSTALL_PATH = "";
2403                                 MACH_O_TYPE = mh_execute;
2404                                 OTHER_CPLUSPLUSFLAGS = (
2405                                         "-DUSE_READLINE",
2406                                         "-DBIT_VERSION",
2407                                         "$(OTHER_CFLAGS)",
2408                                 );
2409                                 OTHER_LDFLAGS = (
2410                                         "-lncurses",
2411                                         "-lreadline",
2412                                 );
2413                                 SDKROOT = macosx10.6;
2414                         };
2415                         name = Release;
2416                 };
2417 /* End XCBuildConfiguration section */
2418
2419 /* Begin XCConfigurationList section */
2420                 1DEB928508733DD80010E9CD /* Build configuration list for PBXNativeTarget "Mothur" */ = {
2421                         isa = XCConfigurationList;
2422                         buildConfigurations = (
2423                                 1DEB928608733DD80010E9CD /* Debug */,
2424                                 1DEB928708733DD80010E9CD /* Release */,
2425                         );
2426                         defaultConfigurationIsVisible = 0;
2427                         defaultConfigurationName = Release;
2428                 };
2429                 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
2430                         isa = XCConfigurationList;
2431                         buildConfigurations = (
2432                                 1DEB928A08733DD80010E9CD /* Debug */,
2433                                 1DEB928B08733DD80010E9CD /* Release */,
2434                         );
2435                         defaultConfigurationIsVisible = 0;
2436                         defaultConfigurationName = Release;
2437                 };
2438 /* End XCConfigurationList section */
2439         };
2440         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
2441 }