Mothur.xcodeproj/project.pbxproj

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 113                         dstSubfolderSpec = 0;
 114                         files = (
 115                                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
 116                         );
 117                         runOnlyForDeploymentPostprocessing = 1;
 118                 };
 119 /* End PBXCopyFilesBuildPhase section */
 120
 121 /* Begin PBXFileReference section */
 122                 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
 123                 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
 124                 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
 125                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
 126                 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
 127                 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
 128                 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
 129                 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
 130                 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
 131                 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
 132                 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
 133                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
 134                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
 135                 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
 136                 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
 137                 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
 138                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
 139                 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
 140                 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
 141                 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
 142                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
 143                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
 144                 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
 145                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
 146                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
 147                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
 148                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
 149                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
 150                 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
 151                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
 152                 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
 153                 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
 154                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
 155                 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
 156                 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
 157                 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
 158                 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
 159                 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
 160                 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
 161                 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
 162                 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
 163                 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
 164                 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
 165                 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
 166                 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
 167                 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
 168                 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
 169                 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
 170                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
 171                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
 172                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
 173                 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
 174                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
 175                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
 176                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
 177                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
 178                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
 179                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
 180                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
 181                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
 182                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
 183                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
 184                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
 185                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
 186                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
 187                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
 188                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
 189                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
 190                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
 191                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
 192                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
 193                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
 194                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
 195                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
 196                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
 197                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
 198                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
 199                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
 200                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
 201                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
 202                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
 203                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
 204                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
 205                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
 206                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
 207                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
 208                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
 209                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
 210                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
 211                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
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 228                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
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 231                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
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 301                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
 302                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
 303                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
 304                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
 305                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
 306                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
 307                 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
 308                 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
 309                 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
 310                 EB1216E40F61ACFB004A865F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
 311                 EB1217210F61C9AC004A865F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
 312                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
 313                 EB6E68170F5F1C780044E17B /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
 314                 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
 315                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
 316                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
 317                 EB9303E90F534D9400E8EF26 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
 318                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
 319                 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
 320                 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
 321                 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = jackknife2.h; path = ../jackknife2.h; sourceTree = SOURCE_ROOT; };
 322                 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = jackknife2.cpp; path = ../jackknife2.cpp; sourceTree = SOURCE_ROOT; };
 323 /* End PBXFileReference section */
 324
 325 /* Begin PBXFrameworksBuildPhase section */
 326                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 327                         isa = PBXFrameworksBuildPhase;
 328                         buildActionMask = 2147483647;
 329                         files = (
 330                         );
 331                         runOnlyForDeploymentPostprocessing = 0;
 332                 };
 333 /* End PBXFrameworksBuildPhase section */
 334
 335 /* Begin PBXGroup section */
 336                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 337                         isa = PBXGroup;
 338                         children = (
 339                                 08FB7795FE84155DC02AAC07 /* Source */,
 340                                 C6859E8C029090F304C91782 /* Documentation */,
 341                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 342                         );
 343                         name = Mothur;
 344                         sourceTree = "<group>";
 345                 };
 346                 08FB7795FE84155DC02AAC07 /* Source */ = {
 347                         isa = PBXGroup;
 348                         children = (
 349                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 350                                 37D928A60F2133C0001D4494 /* calculators */,
 351                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 352                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 353                                 37D928A90F2133E5001D4494 /* commands */,
 354                                 37D927C60F21331F001D4494 /* collect.h */,
 355                                 37D927C50F21331F001D4494 /* collect.cpp */,
 356                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 357                                 37D928AC0F213420001D4494 /* containers */,
 358                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 359                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 360                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 361                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 362                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 363                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 364                                 37D927D40F21331F001D4494 /* database.hpp */,
 365                                 37D927D30F21331F001D4494 /* database.cpp */,
 366                                 37D927D60F21331F001D4494 /* display.h */,
 367                                 37D927D80F21331F001D4494 /* engine.hpp */,
 368                                 37D927D70F21331F001D4494 /* engine.cpp */,
 369                                 37D928B10F213472001D4494 /* errorcheckor */,
 370                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 371                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 372                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 373                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 374                                 37D927E60F21331F001D4494 /* inputdata.h */,
 375                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 376                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 377                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 378                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 379                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 380                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 381                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 382                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 383                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 384                                 37D927F60F21331F001D4494 /* observable.h */,
 385                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 386                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 387                                 37D928040F21331F001D4494 /* raredisplay.h */,
 388                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 389                                 37D928060F21331F001D4494 /* rarefact.h */,
 390                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 391                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 392                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 393                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 394                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 395                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 396                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 397                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 398                                 37D928210F21331F001D4494 /* shared.h */,
 399                                 37D928200F21331F001D4494 /* shared.cpp */,
 400                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 401                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 402                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 403                                 37D928480F21331F001D4494 /* summarydata.h */,
 404                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 405                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 406                         );
 407                         name = Source;
 408                         sourceTree = "<group>";
 409                 };
 410                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 411                         isa = PBXGroup;
 412                         children = (
 413                                 8DD76F6C0486A84900D96B5E /* mothur */,
 414                         );
 415                         name = Products;
 416                         sourceTree = "<group>";
 417                 };
 418                 37D928A60F2133C0001D4494 /* calculators */ = {
 419                         isa = PBXGroup;
 420                         children = (
 421                                 37D927BE0F21331F001D4494 /* calculator.h */,
 422                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 423                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 424                                 37D927B90F21331F001D4494 /* ace.h */,
 425                                 37D927B80F21331F001D4494 /* ace.cpp */,
 426                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 427                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 428                                 37D927C00F21331F001D4494 /* chao1.h */,
 429                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 430                                 EB9303F70F53517300E8EF26 /* geom.h */,
 431                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
 432                                 EB6E68170F5F1C780044E17B /* qstat.h */,
 433                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
 434                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
 435                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
 436                                 EB1216860F619B83004A865F /* bergerparker.h */,
 437                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
 438                                 EB1216E30F61ACFB004A865F /* bstick.h */,
 439                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
 440                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
 441                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
 442                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
 443                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
 444                                 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */,
 445                                 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */,
 446                                 37D927E80F21331F001D4494 /* jackknife.h */,
 447                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 448                                 37D927F50F21331F001D4494 /* npshannon.h */,
 449                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 450                                 379294880F2E258500B9034A /* parsimony.h */,
 451                                 379294890F2E258500B9034A /* parsimony.cpp */,
 452                                 37D928020F21331F001D4494 /* rarecalc.h */,
 453                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 454                                 37D9281F0F21331F001D4494 /* shannon.h */,
 455                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 456                                 37D928230F21331F001D4494 /* sharedace.h */,
 457                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 458                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 459                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 460                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 461                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 462                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 463                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 464                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 465                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 466                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 467                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 468                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 469                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 470                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 471                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 472                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 473                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 474                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 475                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 476                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 477                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 478                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 479                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 480                                 37D928410F21331F001D4494 /* simpson.h */,
 481                                 37D928400F21331F001D4494 /* simpson.cpp */,
 482                                 37D928430F21331F001D4494 /* sobs.h */,
 483                                 374610810F40652400460C57 /* unweighted.h */,
 484                                 374610820F40652400460C57 /* unweighted.cpp */,
 485                                 37D9284E0F21331F001D4494 /* uvest.h */,
 486                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 487                                 3746107C0F4064D100460C57 /* weighted.h */,
 488                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 489                         );
 490                         name = calculators;
 491                         sourceTree = "<group>";
 492                 };
 493                 37D928A90F2133E5001D4494 /* commands */ = {
 494                         isa = PBXGroup;
 495                         children = (
 496                                 37D927CD0F21331F001D4494 /* command.hpp */,
 497                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 498                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 499                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 500                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 501                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 502                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 503                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 504                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 505                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 506                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 507                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 508                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 509                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 510                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 511                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 512                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 513                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 514                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 515                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 516                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 517                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 518                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 519                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 520                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 521                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 522                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 523                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 524                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 525                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 526                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 527                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 528                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 529                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 530                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 531                                 37D928470F21331F001D4494 /* summarycommand.h */,
 532                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 533                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 534                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 535                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 536                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 537                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 538                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 539                         );
 540                         name = commands;
 541                         sourceTree = "<group>";
 542                 };
 543                 37D928AC0F213420001D4494 /* containers */ = {
 544                         isa = PBXGroup;
 545                         children = (
 546                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 547                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 548                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 549                                 37D927E20F21331F001D4494 /* groupmap.h */,
 550                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 551                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 552                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 553                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 554                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 555                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 556                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 557                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 558                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 559                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 560                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 561                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 562                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 563                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 564                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 565                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 566                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 567                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 568                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 569                                 379293C10F2DE73400B9034A /* treemap.h */,
 570                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 571                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 572                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 573                         );
 574                         name = containers;
 575                         sourceTree = "<group>";
 576                 };
 577                 37D928B10F213472001D4494 /* errorcheckor */ = {
 578                         isa = PBXGroup;
 579                         children = (
 580                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 581                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 582                                 37D928500F21331F001D4494 /* validcalculator.h */,
 583                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 584                                 37D928520F21331F001D4494 /* validcommands.h */,
 585                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 586                                 37D928540F21331F001D4494 /* validparameter.h */,
 587                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 588                         );
 589                         name = errorcheckor;
 590                         sourceTree = "<group>";
 591                 };
 592                 C6859E8C029090F304C91782 /* Documentation */ = {
 593                         isa = PBXGroup;
 594                         children = (
 595                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 596                         );
 597                         name = Documentation;
 598                         sourceTree = "<group>";
 599                 };
 600 /* End PBXGroup section */
 601
 602 /* Begin PBXNativeTarget section */
 603                 8DD76F620486A84900D96B5E /* mothur */ = {
 604                         isa = PBXNativeTarget;
 605                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 606                         buildPhases = (
 607                                 8DD76F640486A84900D96B5E /* Sources */,
 608                                 8DD76F660486A84900D96B5E /* Frameworks */,
 609                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 610                         );
 611                         buildRules = (
 612                         );
 613                         dependencies = (
 614                         );
 615                         name = mothur;
 616                         productInstallPath = "$(HOME)/bin";
 617                         productName = Mothur;
 618                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 619                         productType = "com.apple.product-type.tool";
 620                 };
 621 /* End PBXNativeTarget section */
 622
 623 /* Begin PBXProject section */
 624                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 625                         isa = PBXProject;
 626                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 627                         compatibilityVersion = "Xcode 3.0";
 628                         hasScannedForEncodings = 1;
 629                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 630                         projectDirPath = "";
 631                         projectRoot = "";
 632                         targets = (
 633                                 8DD76F620486A84900D96B5E /* mothur */,
 634                         );
 635                 };
 636 /* End PBXProject section */
 637
 638 /* Begin PBXSourcesBuildPhase section */
 639                 8DD76F640486A84900D96B5E /* Sources */ = {
 640                         isa = PBXSourcesBuildPhase;
 641                         buildActionMask = 2147483647;
 642                         files = (
 643                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
 644                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
 645                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 646                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 647                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 648                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 649                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 650                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 651                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 652                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 653                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 654                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 655                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 656                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 657                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
 658                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
 659                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
 660                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
 661                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 662                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
 663                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
 664                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 665                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 666                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 667                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 668                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
 669                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
 670                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
 671                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
 672                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
 673                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
 674                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
 675                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
 676                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
 677                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
 678                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
 679                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
 680                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
 681                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
 682                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
 683                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
 684                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 685                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
 686                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
 687                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
 688                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
 689                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
 690                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
 691                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
 692                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
 693                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
 694                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
 695                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
 696                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
 697                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
 698                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 699                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
 700                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 701                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 702                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 703                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 704                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 705                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 706                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 707                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
 708                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
 709                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
 710                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
 711                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
 712                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
 713                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
 714                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
 715                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
 716                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
 717                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
 718                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
 719                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
 720                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
 721                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 722                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
 723                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
 724                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
 725                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
 726                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
 727                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
 728                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
 729                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
 730                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
 731                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
 732                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
 733                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
 734                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
 735                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
 736                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
 737                                 EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */,
 738                         );
 739                         runOnlyForDeploymentPostprocessing = 0;
 740                 };
 741 /* End PBXSourcesBuildPhase section */
 742
 743 /* Begin XCBuildConfiguration section */
 744                 1DEB923208733DC60010E9CD /* Debug */ = {
 745                         isa = XCBuildConfiguration;
 746                         buildSettings = {
 747                                 COPY_PHASE_STRIP = NO;
 748                                 GCC_DYNAMIC_NO_PIC = NO;
 749                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
 750                                 GCC_MODEL_TUNING = G5;
 751                                 GCC_OPTIMIZATION_LEVEL = 0;
 752                                 GCC_PREPROCESSOR_DEFINITIONS = (
 753                                         "_GLIBCXX_DEBUG=1",
 754                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
 755                                 );
 756                                 INSTALL_PATH = /usr/local/bin;
 757                                 PRODUCT_NAME = mothur;
 758                                 ZERO_LINK = YES;
 759                         };
 760                         name = Debug;
 761                 };
 762                 1DEB923308733DC60010E9CD /* Release */ = {
 763                         isa = XCBuildConfiguration;
 764                         buildSettings = {
 765                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
 766                                 GCC_MODEL_TUNING = G5;
 767                                 INSTALL_PATH = /usr/local/bin;
 768                                 PRODUCT_NAME = mothur;
 769                         };
 770                         name = Release;
 771                 };
 772                 1DEB923608733DC60010E9CD /* Debug */ = {
 773                         isa = XCBuildConfiguration;
 774                         buildSettings = {
 775                                 GCC_OPTIMIZATION_LEVEL = 3;
 776                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 777                                 GCC_WARN_UNUSED_VARIABLE = YES;
 778                                 PREBINDING = NO;
 779                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 780                         };
 781                         name = Debug;
 782                 };
 783                 1DEB923708733DC60010E9CD /* Release */ = {
 784                         isa = XCBuildConfiguration;
 785                         buildSettings = {
 786                                 ARCHS = (
 787                                         ppc,
 788                                         i386,
 789                                 );
 790                                 GCC_OPTIMIZATION_LEVEL = 0;
 791                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 792                                 GCC_WARN_UNUSED_VARIABLE = YES;
 793                                 PREBINDING = NO;
 794                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
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 796                         name = Release;
 797                 };
 798 /* End XCBuildConfiguration section */
 799
 800 /* Begin XCConfigurationList section */
 801                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
 802                         isa = XCConfigurationList;
 803                         buildConfigurations = (
 804                                 1DEB923208733DC60010E9CD /* Debug */,
 805                                 1DEB923308733DC60010E9CD /* Release */,
 806                         );
 807                         defaultConfigurationIsVisible = 0;
 808                         defaultConfigurationName = Release;
 809                 };
 810                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 811                         isa = XCConfigurationList;
 812                         buildConfigurations = (
 813                                 1DEB923608733DC60010E9CD /* Debug */,
 814                                 1DEB923708733DC60010E9CD /* Release */,
 815                         );
 816                         defaultConfigurationIsVisible = 0;
 817                         defaultConfigurationName = Release;
 818                 };
 819 /* End XCConfigurationList section */
 820         };
 821         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
 822 }