Mothur.xcodeproj/project.pbxproj

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 153                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
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 155                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
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 209                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
 210                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
 211                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
 212                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
 213                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
 214                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
 215                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
 216                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
 217                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
 218                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
 219                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
 220                 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
 221                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
 222                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
 223                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
 224                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
 225                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
 226                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
 227                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
 228                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
 229                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
 230                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
 231                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
 232                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
 233                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
 234                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
 235                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
 236                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
 237                 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
 238                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
 239                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
 240                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
 241                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
 242                 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
 243                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
 244                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
 245                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
 246                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
 247                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
 248                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
 249                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
 250                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 251                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
 252 /* End PBXFileReference section */
 253
 254 /* Begin PBXFrameworksBuildPhase section */
 255                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 256                         isa = PBXFrameworksBuildPhase;
 257                         buildActionMask = 2147483647;
 258                         files = (
 259                         );
 260                         runOnlyForDeploymentPostprocessing = 0;
 261                 };
 262 /* End PBXFrameworksBuildPhase section */
 263
 264 /* Begin PBXGroup section */
 265                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 266                         isa = PBXGroup;
 267                         children = (
 268                                 08FB7795FE84155DC02AAC07 /* Source */,
 269                                 C6859E8C029090F304C91782 /* Documentation */,
 270                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 271                         );
 272                         name = Mothur;
 273                         sourceTree = "<group>";
 274                 };
 275                 08FB7795FE84155DC02AAC07 /* Source */ = {
 276                         isa = PBXGroup;
 277                         children = (
 278                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 279                                 37D928A60F2133C0001D4494 /* calculators */,
 280                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 281                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 282                                 37D928A90F2133E5001D4494 /* commands */,
 283                                 37D927C50F21331F001D4494 /* collect.cpp */,
 284                                 37D927C60F21331F001D4494 /* collect.h */,
 285                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 286                                 37D928AC0F213420001D4494 /* containers */,
 287                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 288                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 289                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 290                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 291                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 292                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 293                                 37D927D30F21331F001D4494 /* database.cpp */,
 294                                 37D927D40F21331F001D4494 /* database.hpp */,
 295                                 37D927D60F21331F001D4494 /* display.h */,
 296                                 37D927D70F21331F001D4494 /* engine.cpp */,
 297                                 37D927D80F21331F001D4494 /* engine.hpp */,
 298                                 37D928B10F213472001D4494 /* errorcheckor */,
 299                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 300                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 301                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 302                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 303                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 304                                 37D927E60F21331F001D4494 /* inputdata.h */,
 305                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 306                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 307                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 308                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 309                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 310                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 311                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 312                                 37D927F60F21331F001D4494 /* observable.h */,
 313                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 314                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 315                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 316                                 37D928040F21331F001D4494 /* raredisplay.h */,
 317                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 318                                 37D928060F21331F001D4494 /* rarefact.h */,
 319                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 320                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 321                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 322                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 323                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 324                                 37D928200F21331F001D4494 /* shared.cpp */,
 325                                 37D928210F21331F001D4494 /* shared.h */,
 326                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 327                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 328                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 329                                 37D928480F21331F001D4494 /* summarydata.h */,
 330                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 331                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 332                         );
 333                         name = Source;
 334                         sourceTree = "<group>";
 335                 };
 336                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 337                         isa = PBXGroup;
 338                         children = (
 339                                 8DD76F6C0486A84900D96B5E /* mothur */,
 340                         );
 341                         name = Products;
 342                         sourceTree = "<group>";
 343                 };
 344                 37D928A60F2133C0001D4494 /* calculators */ = {
 345                         isa = PBXGroup;
 346                         children = (
 347                                 37D927BE0F21331F001D4494 /* calculator.h */,
 348                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 349                                 37D927B90F21331F001D4494 /* ace.h */,
 350                                 37D927B80F21331F001D4494 /* ace.cpp */,
 351                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 352                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 353                                 37D927C00F21331F001D4494 /* chao1.h */,
 354                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 355                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 356                                 37D927E80F21331F001D4494 /* jackknife.h */,
 357                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 358                                 37D927F50F21331F001D4494 /* npshannon.h */,
 359                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 360                                 37D928020F21331F001D4494 /* rarecalc.h */,
 361                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 362                                 37D9281F0F21331F001D4494 /* shannon.h */,
 363                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 364                                 37D928230F21331F001D4494 /* sharedace.h */,
 365                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 366                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 367                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 368                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 369                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 370                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 371                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 372                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 373                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 374                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 375                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 376                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 377                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 378                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 379                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 380                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 381                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 382                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 383                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 384                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 385                                 37D928400F21331F001D4494 /* simpson.cpp */,
 386                                 37D928410F21331F001D4494 /* simpson.h */,
 387                                 37D928430F21331F001D4494 /* sobs.h */,
 388                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 389                                 37D9284E0F21331F001D4494 /* uvest.h */,
 390                         );
 391                         name = calculators;
 392                         sourceTree = "<group>";
 393                 };
 394                 37D928A90F2133E5001D4494 /* commands */ = {
 395                         isa = PBXGroup;
 396                         children = (
 397                                 37D927CD0F21331F001D4494 /* command.hpp */,
 398                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 399                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 400                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 401                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 402                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 403                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 404                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 405                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 406                                 37D927F20F21331F001D4494 /* nocommand.cpp */,
 407                                 37D927F30F21331F001D4494 /* nocommand.h */,
 408                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 409                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 410                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 411                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 412                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 413                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 414                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 415                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 416                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 417                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 418                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 419                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 420                                 372E12BF0F2648250095CF7E /* readlistcommand.h */,
 421                                 372E12C00F2648250095CF7E /* readlistcommand.cpp */,
 422                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 423                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 424                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 425                                 37D928470F21331F001D4494 /* summarycommand.h */,
 426                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 427                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 428                         );
 429                         name = commands;
 430                         sourceTree = "<group>";
 431                 };
 432                 37D928AC0F213420001D4494 /* containers */ = {
 433                         isa = PBXGroup;
 434                         children = (
 435                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 436                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 437                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 438                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 439                                 37D927E20F21331F001D4494 /* groupmap.h */,
 440                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 441                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 442                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 443                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 444                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 445                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 446                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 447                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 448                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 449                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 450                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 451                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 452                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 453                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 454                         );
 455                         name = containers;
 456                         sourceTree = "<group>";
 457                 };
 458                 37D928B10F213472001D4494 /* errorcheckor */ = {
 459                         isa = PBXGroup;
 460                         children = (
 461                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 462                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 463                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 464                                 37D928500F21331F001D4494 /* validcalculator.h */,
 465                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 466                                 37D928520F21331F001D4494 /* validcommands.h */,
 467                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 468                                 37D928540F21331F001D4494 /* validparameter.h */,
 469                         );
 470                         name = errorcheckor;
 471                         sourceTree = "<group>";
 472                 };
 473                 C6859E8C029090F304C91782 /* Documentation */ = {
 474                         isa = PBXGroup;
 475                         children = (
 476                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 477                         );
 478                         name = Documentation;
 479                         sourceTree = "<group>";
 480                 };
 481 /* End PBXGroup section */
 482
 483 /* Begin PBXNativeTarget section */
 484                 8DD76F620486A84900D96B5E /* mothur */ = {
 485                         isa = PBXNativeTarget;
 486                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 487                         buildPhases = (
 488                                 8DD76F640486A84900D96B5E /* Sources */,
 489                                 8DD76F660486A84900D96B5E /* Frameworks */,
 490                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 491                         );
 492                         buildRules = (
 493                         );
 494                         dependencies = (
 495                         );
 496                         name = mothur;
 497                         productInstallPath = "$(HOME)/bin";
 498                         productName = Mothur;
 499                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 500                         productType = "com.apple.product-type.tool";
 501                 };
 502 /* End PBXNativeTarget section */
 503
 504 /* Begin PBXProject section */
 505                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 506                         isa = PBXProject;
 507                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 508                         compatibilityVersion = "Xcode 3.0";
 509                         hasScannedForEncodings = 1;
 510                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 511                         projectDirPath = "";
 512                         projectRoot = "";
 513                         targets = (
 514                                 8DD76F620486A84900D96B5E /* mothur */,
 515                         );
 516                 };
 517 /* End PBXProject section */
 518
 519 /* Begin PBXSourcesBuildPhase section */
 520                 8DD76F640486A84900D96B5E /* Sources */ = {
 521                         isa = PBXSourcesBuildPhase;
 522                         buildActionMask = 2147483647;
 523                         files = (
 524                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
 525                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
 526                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 527                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 528                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 529                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 530                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 531                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 532                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 533                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 534                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 535                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 536                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 537                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 538                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
 539                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
 540                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
 541                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
 542                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 543                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
 544                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
 545                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 546                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 547                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 548                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 549                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
 550                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
 551                                 37D928710F21331F001D4494 /* nocommand.cpp in Sources */,
 552                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
 553                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
 554                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
 555                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
 556                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
 557                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
 558                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
 559                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
 560                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
 561                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
 562                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
 563                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
 564                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
 565                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
 566                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 567                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
 568                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
 569                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
 570                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
 571                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
 572                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
 573                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
 574                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
 575                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
 576                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
 577                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
 578                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
 579                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
 580                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 581                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
 582                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 583                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 584                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 585                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 586                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 587                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 588                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 589                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
 590                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
 591                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
 592                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
 593                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
 594                                 372E12C10F2648250095CF7E /* readlistcommand.cpp in Sources */,
 595                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
 596                         );
 597                         runOnlyForDeploymentPostprocessing = 0;
 598                 };
 599 /* End PBXSourcesBuildPhase section */
 600
 601 /* Begin XCBuildConfiguration section */
 602                 1DEB923208733DC60010E9CD /* Debug */ = {
 603                         isa = XCBuildConfiguration;
 604                         buildSettings = {
 605                                 COPY_PHASE_STRIP = NO;
 606                                 GCC_DYNAMIC_NO_PIC = NO;
 607                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
 608                                 GCC_MODEL_TUNING = G5;
 609                                 GCC_OPTIMIZATION_LEVEL = 0;
 610                                 GCC_PREPROCESSOR_DEFINITIONS = (
 611                                         "_GLIBCXX_DEBUG=1",
 612                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
 613                                 );
 614                                 INSTALL_PATH = /usr/local/bin;
 615                                 PRODUCT_NAME = mothur;
 616                                 ZERO_LINK = YES;
 617                         };
 618                         name = Debug;
 619                 };
 620                 1DEB923308733DC60010E9CD /* Release */ = {
 621                         isa = XCBuildConfiguration;
 622                         buildSettings = {
 623                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
 624                                 GCC_MODEL_TUNING = G5;
 625                                 INSTALL_PATH = /usr/local/bin;
 626                                 PRODUCT_NAME = mothur;
 627                         };
 628                         name = Release;
 629                 };
 630                 1DEB923608733DC60010E9CD /* Debug */ = {
 631                         isa = XCBuildConfiguration;
 632                         buildSettings = {
 633                                 GCC_OPTIMIZATION_LEVEL = 3;
 634                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 635                                 GCC_WARN_UNUSED_VARIABLE = YES;
 636                                 PREBINDING = NO;
 637                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 638                         };
 639                         name = Debug;
 640                 };
 641                 1DEB923708733DC60010E9CD /* Release */ = {
 642                         isa = XCBuildConfiguration;
 643                         buildSettings = {
 644                                 ARCHS = (
 645                                         ppc,
 646                                         i386,
 647                                 );
 648                                 GCC_OPTIMIZATION_LEVEL = 3;
 649                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 650                                 GCC_WARN_UNUSED_VARIABLE = YES;
 651                                 PREBINDING = NO;
 652                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 653                         };
 654                         name = Release;
 655                 };
 656 /* End XCBuildConfiguration section */
 657
 658 /* Begin XCConfigurationList section */
 659                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
 660                         isa = XCConfigurationList;
 661                         buildConfigurations = (
 662                                 1DEB923208733DC60010E9CD /* Debug */,
 663                                 1DEB923308733DC60010E9CD /* Release */,
 664                         );
 665                         defaultConfigurationIsVisible = 0;
 666                         defaultConfigurationName = Release;
 667                 };
 668                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 669                         isa = XCConfigurationList;
 670                         buildConfigurations = (
 671                                 1DEB923608733DC60010E9CD /* Debug */,
 672                                 1DEB923708733DC60010E9CD /* Release */,
 673                         );
 674                         defaultConfigurationIsVisible = 0;
 675                         defaultConfigurationName = Release;
 676                 };
 677 /* End XCConfigurationList section */
 678         };
 679         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
 680 }