]> git.donarmstrong.com Git - mothur.git/blob - Mothur.xcodeproj/project.pbxproj
added heatmap command
[mothur.git] / Mothur.xcodeproj / project.pbxproj
1 // !$*UTF8*$!
2 {
3         archiveVersion = 1;
4         classes = {
5         };
6         objectVersion = 44;
7         objects = {
8
9 /* Begin PBXBuildFile section */
10                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E126F0F26365B0095CF7E /* readotucommand.cpp */; };
11                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12950F263D5A0095CF7E /* readdistcommand.cpp */; };
12                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12EC0F264D320095CF7E /* commandfactory.cpp */; };
13                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610770F40645300460C57 /* unifracweightedcommand.cpp */; };
14                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
15                 374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
16                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
17                 375873A70F7D61240040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738B0F7D61240040F377 /* coverage.cpp */; };
18                 375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738D0F7D61240040F377 /* fullmatrix.cpp */; };
19                 375873A90F7D61240040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738F0F7D61240040F377 /* heatmap.cpp */; };
20                 375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873910F7D61240040F377 /* heatmapcommand.cpp */; };
21                 375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873930F7D61240040F377 /* libshuffcommand.cpp */; };
22                 375873AC0F7D61240040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873950F7D61240040F377 /* nocommands.cpp */; };
23                 375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */; };
24                 375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739C0F7D61240040F377 /* sharedkulczynski.cpp */; };
25                 375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */; };
26                 375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A00F7D61240040F377 /* sharedlennon.cpp */; };
27                 375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */; };
28                 375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A50F7D61240040F377 /* sharedochiai.cpp */; };
29                 375873E70F7D63E90040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873E50F7D63E90040F377 /* coverage.cpp */; };
30                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EB0F7D64520040F377 /* fullmatrix.cpp */; };
31                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EE0F7D646F0040F377 /* heatmap.cpp */; };
32                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F00F7D64800040F377 /* heatmapcommand.cpp */; };
33                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F30F7D648F0040F377 /* libshuffcommand.cpp */; };
34                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F60F7D649C0040F377 /* nocommands.cpp */; };
35                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */; };
36                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */; };
37                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */; };
38                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */; };
39                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */; };
40                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */; };
41                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379293C20F2DE73400B9034A /* treemap.cpp */; };
42                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
43                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
44                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */; };
45                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */; };
46                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */; };
47                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */; };
48                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37B28F670F27590100808A62 /* deconvolutecommand.cpp */; };
49                 37D928550F21331F001D4494 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927B80F21331F001D4494 /* ace.cpp */; };
50                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BA0F21331F001D4494 /* averagelinkage.cpp */; };
51                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BB0F21331F001D4494 /* bootstrap.cpp */; };
52                 37D928580F21331F001D4494 /* calculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BD0F21331F001D4494 /* calculator.cpp */; };
53                 37D928590F21331F001D4494 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BF0F21331F001D4494 /* chao1.cpp */; };
54                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C10F21331F001D4494 /* cluster.cpp */; };
55                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C30F21331F001D4494 /* clustercommand.cpp */; };
56                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C50F21331F001D4494 /* collect.cpp */; };
57                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C70F21331F001D4494 /* collectcommand.cpp */; };
58                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */; };
59                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D00F21331F001D4494 /* commandoptionparser.cpp */; };
60                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D20F21331F001D4494 /* completelinkage.cpp */; };
61                 37D928620F21331F001D4494 /* database.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D30F21331F001D4494 /* database.cpp */; };
62                 37D928630F21331F001D4494 /* engine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D70F21331F001D4494 /* engine.cpp */; };
63                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D90F21331F001D4494 /* errorchecking.cpp */; };
64                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DB0F21331F001D4494 /* fastamap.cpp */; };
65                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DD0F21331F001D4494 /* fileoutput.cpp */; };
66                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DF0F21331F001D4494 /* globaldata.cpp */; };
67                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E10F21331F001D4494 /* groupmap.cpp */; };
68                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E30F21331F001D4494 /* helpcommand.cpp */; };
69                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E50F21331F001D4494 /* inputdata.cpp */; };
70                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E70F21331F001D4494 /* jackknife.cpp */; };
71                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E90F21331F001D4494 /* kmer.cpp */; };
72                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EB0F21331F001D4494 /* kmerdb.cpp */; };
73                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927ED0F21331F001D4494 /* listvector.cpp */; };
74                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EF0F21331F001D4494 /* mothur.cpp */; };
75                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F00F21331F001D4494 /* nameassignment.cpp */; };
76                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F40F21331F001D4494 /* npshannon.cpp */; };
77                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F70F21331F001D4494 /* ordervector.cpp */; };
78                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F90F21331F001D4494 /* parselistcommand.cpp */; };
79                 37D928750F21331F001D4494 /* progress.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FB0F21331F001D4494 /* progress.cpp */; };
80                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FD0F21331F001D4494 /* quitcommand.cpp */; };
81                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FF0F21331F001D4494 /* rabundvector.cpp */; };
82                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928010F21331F001D4494 /* rarecalc.cpp */; };
83                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928030F21331F001D4494 /* raredisplay.cpp */; };
84                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928050F21331F001D4494 /* rarefact.cpp */; };
85                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928070F21331F001D4494 /* rarefactcommand.cpp */; };
86                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */; };
87                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928120F21331F001D4494 /* readmatrix.cpp */; };
88                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281A0F21331F001D4494 /* sabundvector.cpp */; };
89                 37D928850F21331F001D4494 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281C0F21331F001D4494 /* sequence.cpp */; };
90                 37D928860F21331F001D4494 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281E0F21331F001D4494 /* shannon.cpp */; };
91                 37D928870F21331F001D4494 /* shared.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928200F21331F001D4494 /* shared.cpp */; };
92                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928220F21331F001D4494 /* sharedace.cpp */; };
93                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928240F21331F001D4494 /* sharedchao1.cpp */; };
94                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928260F21331F001D4494 /* sharedcommand.cpp */; };
95                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928280F21331F001D4494 /* sharedjabund.cpp */; };
96                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282A0F21331F001D4494 /* sharedjclass.cpp */; };
97                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282C0F21331F001D4494 /* sharedjest.cpp */; };
98                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282E0F21331F001D4494 /* sharedordervector.cpp */; };
99                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928300F21331F001D4494 /* sharedrabundvector.cpp */; };
100                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928320F21331F001D4494 /* sharedsabundvector.cpp */; };
101                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928340F21331F001D4494 /* sharedsobs.cpp */; };
102                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928360F21331F001D4494 /* sharedsorabund.cpp */; };
103                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928380F21331F001D4494 /* sharedsorclass.cpp */; };
104                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283A0F21331F001D4494 /* sharedsorest.cpp */; };
105                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283C0F21331F001D4494 /* sharedthetan.cpp */; };
106                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */; };
107                 37D928970F21331F001D4494 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928400F21331F001D4494 /* simpson.cpp */; };
108                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928420F21331F001D4494 /* singlelinkage.cpp */; };
109                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928440F21331F001D4494 /* sparsematrix.cpp */; };
110                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928460F21331F001D4494 /* summarycommand.cpp */; };
111                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */; };
112                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284D0F21331F001D4494 /* uvest.cpp */; };
113                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284F0F21331F001D4494 /* validcalculator.cpp */; };
114                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928510F21331F001D4494 /* validcommands.cpp */; };
115                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928530F21331F001D4494 /* validparameter.cpp */; };
116                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F3E20F29FD4200F8D827 /* treenode.cpp */; };
117                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */; };
118                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6859E8B029090EE04C91782 /* Mothur.1 */; };
119                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */; };
120                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */; };
121                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */; };
122                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216870F619B83004A865F /* bergerparker.cpp */; };
123                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216E40F61ACFB004A865F /* bstick.cpp */; };
124                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1217220F61C9AC004A865F /* sharedkstest.cpp */; };
125                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6E68180F5F1C780044E17B /* qstat.cpp */; };
126                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */; };
127                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303EA0F534D9400E8EF26 /* logsd.cpp */; };
128                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303F80F53517300E8EF26 /* geom.cpp */; };
129 /* End PBXBuildFile section */
130
131 /* Begin PBXCopyFilesBuildPhase section */
132                 8DD76F690486A84900D96B5E /* CopyFiles */ = {
133                         isa = PBXCopyFilesBuildPhase;
134                         buildActionMask = 8;
135                         dstPath = /usr/share/man/man1/;
136                         dstSubfolderSpec = 0;
137                         files = (
138                                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
139                         );
140                         runOnlyForDeploymentPostprocessing = 1;
141                 };
142 /* End PBXCopyFilesBuildPhase section */
143
144 /* Begin PBXFileReference section */
145                 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
146                 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
147                 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
148                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
149                 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
150                 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
151                 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
152                 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
153                 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
154                 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
155                 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
156                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
157                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
158                 3758738B0F7D61240040F377 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
159                 3758738C0F7D61240040F377 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
160                 3758738D0F7D61240040F377 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
161                 3758738E0F7D61240040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
162                 3758738F0F7D61240040F377 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = "<group>"; };
163                 375873900F7D61240040F377 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = "<group>"; };
164                 375873910F7D61240040F377 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
165                 375873920F7D61240040F377 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
166                 375873930F7D61240040F377 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = "<group>"; };
167                 375873940F7D61240040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
168                 375873950F7D61240040F377 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
169                 375873960F7D61240040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
170                 375873970F7D61240040F377 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
171                 3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
172                 3758739B0F7D61240040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
173                 3758739C0F7D61240040F377 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
174                 3758739D0F7D61240040F377 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
175                 3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
176                 3758739F0F7D61240040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
177                 375873A00F7D61240040F377 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = "<group>"; };
178                 375873A10F7D61240040F377 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
179                 375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
180                 375873A30F7D61240040F377 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
181                 375873A40F7D61240040F377 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
182                 375873A50F7D61240040F377 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
183                 375873A60F7D61240040F377 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
184                 375873E50F7D63E90040F377 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
185                 375873E60F7D63E90040F377 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
186                 375873EA0F7D64520040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
187                 375873EB0F7D64520040F377 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
188                 375873ED0F7D646F0040F377 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = "<group>"; };
189                 375873EE0F7D646F0040F377 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = "<group>"; };
190                 375873F00F7D64800040F377 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
191                 375873F10F7D64800040F377 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
192                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = "<group>"; };
193                 375873F40F7D648F0040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
194                 375873F60F7D649C0040F377 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
195                 375873F70F7D649C0040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
196                 375873F90F7D64AB0040F377 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
197                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
198                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
199                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
200                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = "<group>"; };
201                 375874000F7D64EF0040F377 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
202                 375874010F7D64EF0040F377 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
203                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
204                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
205                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
206                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
207                 375874090F7D64FC0040F377 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
208                 3758740A0F7D64FC0040F377 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
209                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
210                 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
211                 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
212                 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
213                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
214                 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
215                 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
216                 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
217                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
218                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
219                 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
220                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
221                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
222                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
223                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
224                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
225                 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
226                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
227                 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
228                 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
229                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
230                 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
231                 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
232                 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
233                 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
234                 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
235                 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
236                 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
237                 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
238                 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
239                 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
240                 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
241                 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
242                 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
243                 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
244                 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
245                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
246                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
247                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
248                 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
249                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
250                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
251                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
252                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
253                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
254                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
255                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
256                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
257                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
258                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
259                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
260                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
261                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
262                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
263                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
264                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
265                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
266                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
267                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
268                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
269                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
270                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
271                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
272                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
273                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
274                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
275                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
276                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
277                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
278                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
279                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
280                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
281                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
282                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
283                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
284                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
285                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
286                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
287                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
288                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
289                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
290                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
291                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
292                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
293                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
294                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
295                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
296                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
297                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
298                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
299                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
300                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
301                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
302                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
303                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
304                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
305                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
306                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
307                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
308                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
309                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
310                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
311                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
312                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
313                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
314                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
315                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
316                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
317                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
318                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
319                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
320                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
321                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
322                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
323                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
324                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
325                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
326                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
327                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
328                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
329                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
330                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
331                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
332                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
333                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
334                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
335                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
336                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
337                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
338                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
339                 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
340                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
341                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
342                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
343                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
344                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
345                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
346                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
347                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
348                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
349                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
350                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
351                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
352                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
353                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
354                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
355                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
356                 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
357                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
358                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
359                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
360                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
361                 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
362                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
363                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
364                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
365                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
366                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
367                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
368                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
369                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = "<group>"; };
370                 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
371                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
372                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
373                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
374                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
375                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
376                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
377                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
378                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
379                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
380                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
381                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
382                 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
383                 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
384                 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
385                 EB1216E40F61ACFB004A865F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
386                 EB1217210F61C9AC004A865F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
387                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
388                 EB6E68170F5F1C780044E17B /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
389                 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
390                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
391                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
392                 EB9303E90F534D9400E8EF26 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
393                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
394                 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
395                 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
396 /* End PBXFileReference section */
397
398 /* Begin PBXFrameworksBuildPhase section */
399                 8DD76F660486A84900D96B5E /* Frameworks */ = {
400                         isa = PBXFrameworksBuildPhase;
401                         buildActionMask = 2147483647;
402                         files = (
403                         );
404                         runOnlyForDeploymentPostprocessing = 0;
405                 };
406 /* End PBXFrameworksBuildPhase section */
407
408 /* Begin PBXGroup section */
409                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
410                         isa = PBXGroup;
411                         children = (
412                                 08FB7795FE84155DC02AAC07 /* Source */,
413                                 C6859E8C029090F304C91782 /* Documentation */,
414                                 1AB674ADFE9D54B511CA2CBB /* Products */,
415                         );
416                         name = Mothur;
417                         sourceTree = "<group>";
418                 };
419                 08FB7795FE84155DC02AAC07 /* Source */ = {
420                         isa = PBXGroup;
421                         children = (
422                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
423                                 37D928A60F2133C0001D4494 /* calculators */,
424                                 37D927C20F21331F001D4494 /* cluster.hpp */,
425                                 37D927C10F21331F001D4494 /* cluster.cpp */,
426                                 37D928A90F2133E5001D4494 /* commands */,
427                                 37D927C60F21331F001D4494 /* collect.h */,
428                                 37D927C50F21331F001D4494 /* collect.cpp */,
429                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
430                                 37D928AC0F213420001D4494 /* containers */,
431                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
432                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
433                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
434                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
435                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
436                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
437                                 37D927D40F21331F001D4494 /* database.hpp */,
438                                 37D927D30F21331F001D4494 /* database.cpp */,
439                                 37D927D60F21331F001D4494 /* display.h */,
440                                 37D927D80F21331F001D4494 /* engine.hpp */,
441                                 37D927D70F21331F001D4494 /* engine.cpp */,
442                                 37D928B10F213472001D4494 /* errorcheckor */,
443                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
444                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
445                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
446                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
447                                 375873ED0F7D646F0040F377 /* heatmap.h */,
448                                 375873EE0F7D646F0040F377 /* heatmap.cpp */,
449                                 37D927E60F21331F001D4494 /* inputdata.h */,
450                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
451                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
452                                 37D927E90F21331F001D4494 /* kmer.cpp */,
453                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
454                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
455                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
456                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
457                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
458                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
459                                 3758738B0F7D61240040F377 /* coverage.cpp */,
460                                 3758738C0F7D61240040F377 /* coverage.h */,
461                                 3758738D0F7D61240040F377 /* fullmatrix.cpp */,
462                                 3758738E0F7D61240040F377 /* fullmatrix.h */,
463                                 3758738F0F7D61240040F377 /* heatmap.cpp */,
464                                 375873900F7D61240040F377 /* heatmap.h */,
465                                 375873910F7D61240040F377 /* heatmapcommand.cpp */,
466                                 375873920F7D61240040F377 /* heatmapcommand.h */,
467                                 375873930F7D61240040F377 /* libshuffcommand.cpp */,
468                                 375873940F7D61240040F377 /* libshuffcommand.h */,
469                                 375873950F7D61240040F377 /* nocommands.cpp */,
470                                 375873960F7D61240040F377 /* nocommands.h */,
471                                 375873970F7D61240040F377 /* nseqs.h */,
472                                 3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */,
473                                 3758739B0F7D61240040F377 /* sharedbraycurtis.h */,
474                                 3758739C0F7D61240040F377 /* sharedkulczynski.cpp */,
475                                 3758739D0F7D61240040F377 /* sharedkulczynski.h */,
476                                 3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */,
477                                 3758739F0F7D61240040F377 /* sharedkulczynskicody.h */,
478                                 375873A00F7D61240040F377 /* sharedlennon.cpp */,
479                                 375873A10F7D61240040F377 /* sharedlennon.h */,
480                                 375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */,
481                                 375873A30F7D61240040F377 /* sharedmorisitahorn.h */,
482                                 375873A40F7D61240040F377 /* sharednseqs.h */,
483                                 375873A50F7D61240040F377 /* sharedochiai.cpp */,
484                                 375873A60F7D61240040F377 /* sharedochiai.h */,
485                                 37D927F60F21331F001D4494 /* observable.h */,
486                                 37D927FC0F21331F001D4494 /* progress.hpp */,
487                                 37D927FB0F21331F001D4494 /* progress.cpp */,
488                                 37D928040F21331F001D4494 /* raredisplay.h */,
489                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
490                                 37D928060F21331F001D4494 /* rarefact.h */,
491                                 37D928050F21331F001D4494 /* rarefact.cpp */,
492                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
493                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
494                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
495                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
496                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
497                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
498                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
499                                 37D928210F21331F001D4494 /* shared.h */,
500                                 37D928200F21331F001D4494 /* shared.cpp */,
501                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
502                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
503                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
504                                 37D928480F21331F001D4494 /* summarydata.h */,
505                                 37D928490F21331F001D4494 /* summarydisplay.h */,
506                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
507                         );
508                         name = Source;
509                         sourceTree = "<group>";
510                 };
511                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
512                         isa = PBXGroup;
513                         children = (
514                                 8DD76F6C0486A84900D96B5E /* mothur */,
515                         );
516                         name = Products;
517                         sourceTree = "<group>";
518                 };
519                 37D928A60F2133C0001D4494 /* calculators */ = {
520                         isa = PBXGroup;
521                         children = (
522                                 37D927BE0F21331F001D4494 /* calculator.h */,
523                                 3792948D0F2E271100B9034A /* treecalculator.h */,
524                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
525                                 37D927B90F21331F001D4494 /* ace.h */,
526                                 37D927B80F21331F001D4494 /* ace.cpp */,
527                                 EB1216860F619B83004A865F /* bergerparker.h */,
528                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
529                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
530                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
531                                 EB1216E30F61ACFB004A865F /* bstick.h */,
532                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
533                                 37D927C00F21331F001D4494 /* chao1.h */,
534                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
535                                 375873E60F7D63E90040F377 /* coverage.h */,
536                                 375873E50F7D63E90040F377 /* coverage.cpp */,
537                                 EB9303F70F53517300E8EF26 /* geom.h */,
538                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
539                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
540                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
541                                 EB6E68170F5F1C780044E17B /* qstat.h */,
542                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
543                                 37D927E80F21331F001D4494 /* jackknife.h */,
544                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
545                                 375873F90F7D64AB0040F377 /* nseqs.h */,
546                                 37D927F50F21331F001D4494 /* npshannon.h */,
547                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
548                                 379294880F2E258500B9034A /* parsimony.h */,
549                                 379294890F2E258500B9034A /* parsimony.cpp */,
550                                 37D928020F21331F001D4494 /* rarecalc.h */,
551                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
552                                 37D9281F0F21331F001D4494 /* shannon.h */,
553                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
554                                 37D928230F21331F001D4494 /* sharedace.h */,
555                                 37D928220F21331F001D4494 /* sharedace.cpp */,
556                                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
557                                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
558                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
559                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
560                                 37D928250F21331F001D4494 /* sharedchao1.h */,
561                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
562                                 37D928290F21331F001D4494 /* sharedjabund.h */,
563                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
564                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
565                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
566                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
567                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
568                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
569                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
570                                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
571                                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
572                                 375874000F7D64EF0040F377 /* sharedkulczynski.h */,
573                                 375874010F7D64EF0040F377 /* sharedlennon.h */,
574                                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
575                                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
576                                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
577                                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
578                                 375874090F7D64FC0040F377 /* sharedochiai.h */,
579                                 3758740A0F7D64FC0040F377 /* sharednseqs.h */,
580                                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
581                                 37D928350F21331F001D4494 /* sharedsobs.h */,
582                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
583                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
584                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
585                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
586                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
587                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
588                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
589                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
590                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
591                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
592                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
593                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
594                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
595                                 37D928410F21331F001D4494 /* simpson.h */,
596                                 37D928400F21331F001D4494 /* simpson.cpp */,
597                                 37D928430F21331F001D4494 /* sobs.h */,
598                                 374610810F40652400460C57 /* unweighted.h */,
599                                 374610820F40652400460C57 /* unweighted.cpp */,
600                                 37D9284E0F21331F001D4494 /* uvest.h */,
601                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
602                                 3746107C0F4064D100460C57 /* weighted.h */,
603                                 3746107D0F4064D100460C57 /* weighted.cpp */,
604                         );
605                         name = calculators;
606                         sourceTree = "<group>";
607                 };
608                 37D928A90F2133E5001D4494 /* commands */ = {
609                         isa = PBXGroup;
610                         children = (
611                                 37D927CD0F21331F001D4494 /* command.hpp */,
612                                 37D927C40F21331F001D4494 /* clustercommand.h */,
613                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
614                                 37D927C80F21331F001D4494 /* collectcommand.h */,
615                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
616                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
617                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
618                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
619                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
620                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
621                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
622                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
623                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
624                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
625                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
626                                 375873F00F7D64800040F377 /* heatmapcommand.cpp */,
627                                 375873F10F7D64800040F377 /* heatmapcommand.h */,
628                                 37D927E40F21331F001D4494 /* helpcommand.h */,
629                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
630                                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
631                                 375873F40F7D648F0040F377 /* libshuffcommand.h */,
632                                 375873F60F7D649C0040F377 /* nocommands.cpp */,
633                                 375873F70F7D649C0040F377 /* nocommands.h */,
634                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
635                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
636                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
637                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
638                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
639                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
640                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
641                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
642                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
643                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
644                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
645                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
646                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
647                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
648                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
649                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
650                                 37D928270F21331F001D4494 /* sharedcommand.h */,
651                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
652                                 37D928470F21331F001D4494 /* summarycommand.h */,
653                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
654                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
655                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
656                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
657                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
658                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
659                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
660                         );
661                         name = commands;
662                         sourceTree = "<group>";
663                 };
664                 37D928AC0F213420001D4494 /* containers */ = {
665                         isa = PBXGroup;
666                         children = (
667                                 37D927D50F21331F001D4494 /* datavector.hpp */,
668                                 37D927DC0F21331F001D4494 /* fastamap.h */,
669                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
670                                 375873EA0F7D64520040F377 /* fullmatrix.h */,
671                                 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
672                                 37D927E20F21331F001D4494 /* groupmap.h */,
673                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
674                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
675                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
676                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
677                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
678                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
679                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
680                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
681                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
682                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
683                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
684                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
685                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
686                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
687                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
688                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
689                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
690                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
691                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
692                                 379293C10F2DE73400B9034A /* treemap.h */,
693                                 379293C20F2DE73400B9034A /* treemap.cpp */,
694                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
695                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
696                         );
697                         name = containers;
698                         sourceTree = "<group>";
699                 };
700                 37D928B10F213472001D4494 /* errorcheckor */ = {
701                         isa = PBXGroup;
702                         children = (
703                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
704                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
705                                 37D928500F21331F001D4494 /* validcalculator.h */,
706                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
707                                 37D928520F21331F001D4494 /* validcommands.h */,
708                                 37D928510F21331F001D4494 /* validcommands.cpp */,
709                                 37D928540F21331F001D4494 /* validparameter.h */,
710                                 37D928530F21331F001D4494 /* validparameter.cpp */,
711                         );
712                         name = errorcheckor;
713                         sourceTree = "<group>";
714                 };
715                 C6859E8C029090F304C91782 /* Documentation */ = {
716                         isa = PBXGroup;
717                         children = (
718                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
719                         );
720                         name = Documentation;
721                         sourceTree = "<group>";
722                 };
723 /* End PBXGroup section */
724
725 /* Begin PBXNativeTarget section */
726                 8DD76F620486A84900D96B5E /* mothur */ = {
727                         isa = PBXNativeTarget;
728                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
729                         buildPhases = (
730                                 8DD76F640486A84900D96B5E /* Sources */,
731                                 8DD76F660486A84900D96B5E /* Frameworks */,
732                                 8DD76F690486A84900D96B5E /* CopyFiles */,
733                         );
734                         buildRules = (
735                         );
736                         dependencies = (
737                         );
738                         name = mothur;
739                         productInstallPath = "$(HOME)/bin";
740                         productName = Mothur;
741                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
742                         productType = "com.apple.product-type.tool";
743                 };
744 /* End PBXNativeTarget section */
745
746 /* Begin PBXProject section */
747                 08FB7793FE84155DC02AAC07 /* Project object */ = {
748                         isa = PBXProject;
749                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
750                         compatibilityVersion = "Xcode 3.0";
751                         hasScannedForEncodings = 1;
752                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
753                         projectDirPath = "";
754                         projectRoot = "";
755                         targets = (
756                                 8DD76F620486A84900D96B5E /* mothur */,
757                         );
758                 };
759 /* End PBXProject section */
760
761 /* Begin PBXSourcesBuildPhase section */
762                 8DD76F640486A84900D96B5E /* Sources */ = {
763                         isa = PBXSourcesBuildPhase;
764                         buildActionMask = 2147483647;
765                         files = (
766                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
767                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
768                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
769                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
770                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
771                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
772                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
773                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
774                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
775                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
776                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
777                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
778                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
779                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
780                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
781                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
782                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
783                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
784                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
785                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
786                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
787                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
788                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
789                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
790                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
791                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
792                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
793                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
794                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
795                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
796                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
797                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
798                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
799                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
800                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
801                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
802                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
803                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
804                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
805                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
806                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
807                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
808                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
809                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
810                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
811                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
812                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
813                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
814                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
815                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
816                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
817                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
818                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
819                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
820                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
821                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
822                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
823                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
824                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
825                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
826                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
827                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
828                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
829                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
830                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
831                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
832                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
833                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
834                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
835                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
836                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
837                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
838                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
839                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
840                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
841                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
842                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
843                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
844                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
845                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
846                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
847                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
848                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
849                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
850                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
851                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
852                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
853                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
854                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
855                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
856                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
857                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
858                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
859                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
860                                 375873A70F7D61240040F377 /* coverage.cpp in Sources */,
861                                 375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */,
862                                 375873A90F7D61240040F377 /* heatmap.cpp in Sources */,
863                                 375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */,
864                                 375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */,
865                                 375873AC0F7D61240040F377 /* nocommands.cpp in Sources */,
866                                 375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */,
867                                 375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */,
868                                 375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */,
869                                 375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */,
870                                 375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */,
871                                 375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */,
872                                 375873E70F7D63E90040F377 /* coverage.cpp in Sources */,
873                                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
874                                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
875                                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */,
876                                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */,
877                                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
878                                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */,
879                                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */,
880                                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */,
881                                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
882                                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
883                                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
884                         );
885                         runOnlyForDeploymentPostprocessing = 0;
886                 };
887 /* End PBXSourcesBuildPhase section */
888
889 /* Begin XCBuildConfiguration section */
890                 1DEB923208733DC60010E9CD /* Debug */ = {
891                         isa = XCBuildConfiguration;
892                         buildSettings = {
893                                 COPY_PHASE_STRIP = NO;
894                                 GCC_DYNAMIC_NO_PIC = NO;
895                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
896                                 GCC_MODEL_TUNING = G5;
897                                 GCC_OPTIMIZATION_LEVEL = 0;
898                                 GCC_PREPROCESSOR_DEFINITIONS = (
899                                         "_GLIBCXX_DEBUG=1",
900                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
901                                 );
902                                 INSTALL_PATH = /usr/local/bin;
903                                 PRODUCT_NAME = mothur;
904                                 ZERO_LINK = YES;
905                         };
906                         name = Debug;
907                 };
908                 1DEB923308733DC60010E9CD /* Release */ = {
909                         isa = XCBuildConfiguration;
910                         buildSettings = {
911                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
912                                 GCC_MODEL_TUNING = G5;
913                                 INSTALL_PATH = /usr/local/bin;
914                                 PRODUCT_NAME = mothur;
915                         };
916                         name = Release;
917                 };
918                 1DEB923608733DC60010E9CD /* Debug */ = {
919                         isa = XCBuildConfiguration;
920                         buildSettings = {
921                                 GCC_OPTIMIZATION_LEVEL = 3;
922                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
923                                 GCC_WARN_UNUSED_VARIABLE = YES;
924                                 PREBINDING = NO;
925                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
926                         };
927                         name = Debug;
928                 };
929                 1DEB923708733DC60010E9CD /* Release */ = {
930                         isa = XCBuildConfiguration;
931                         buildSettings = {
932                                 ARCHS = (
933                                         ppc,
934                                         i386,
935                                 );
936                                 GCC_OPTIMIZATION_LEVEL = 0;
937                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
938                                 GCC_WARN_UNUSED_VARIABLE = YES;
939                                 PREBINDING = NO;
940                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
941                         };
942                         name = Release;
943                 };
944 /* End XCBuildConfiguration section */
945
946 /* Begin XCConfigurationList section */
947                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
948                         isa = XCConfigurationList;
949                         buildConfigurations = (
950                                 1DEB923208733DC60010E9CD /* Debug */,
951                                 1DEB923308733DC60010E9CD /* Release */,
952                         );
953                         defaultConfigurationIsVisible = 0;
954                         defaultConfigurationName = Release;
955                 };
956                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
957                         isa = XCConfigurationList;
958                         buildConfigurations = (
959                                 1DEB923608733DC60010E9CD /* Debug */,
960                                 1DEB923708733DC60010E9CD /* Release */,
961                         );
962                         defaultConfigurationIsVisible = 0;
963                         defaultConfigurationName = Release;
964                 };
965 /* End XCConfigurationList section */
966         };
967         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
968 }