Mothur.xcodeproj/project.pbxproj

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 232                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
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 245                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
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 248                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
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 250                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
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 380 /* End PBXFrameworksBuildPhase section */
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 384                         isa = PBXGroup;
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 397                                 37D928A60F2133C0001D4494 /* calculators */,
 398                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 399                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 400                                 37D928A90F2133E5001D4494 /* commands */,
 401                                 37D927C60F21331F001D4494 /* collect.h */,
 402                                 37D927C50F21331F001D4494 /* collect.cpp */,
 403                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 404                                 37D928AC0F213420001D4494 /* containers */,
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 408                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
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 410                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
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 412                                 37D927D30F21331F001D4494 /* database.cpp */,
 413                                 37D927D60F21331F001D4494 /* display.h */,
 414                                 37D927D80F21331F001D4494 /* engine.hpp */,
 415                                 37D927D70F21331F001D4494 /* engine.cpp */,
 416                                 37D928B10F213472001D4494 /* errorcheckor */,
 417                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 418                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 419                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 420                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 421                                 375873ED0F7D646F0040F377 /* heatmap.h */,
 422                                 375873EE0F7D646F0040F377 /* heatmap.cpp */,
 423                                 37D927E60F21331F001D4494 /* inputdata.h */,
 424                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 425                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 426                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 427                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 428                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 429                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 430                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 431                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 432                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 433                                 37D927F60F21331F001D4494 /* observable.h */,
 434                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 435                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 436                                 37D928040F21331F001D4494 /* raredisplay.h */,
 437                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 438                                 37D928060F21331F001D4494 /* rarefact.h */,
 439                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 440                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 441                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 442                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 443                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 444                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 445                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 446                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 447                                 37D928210F21331F001D4494 /* shared.h */,
 448                                 37D928200F21331F001D4494 /* shared.cpp */,
 449                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 450                                 37D928480F21331F001D4494 /* summarydata.h */,
 451                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 452                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 453                                 37519AB30F810FAE00FED5E8 /* venn.h */,
 454                                 37519AB40F810FAE00FED5E8 /* venn.cpp */,
 455                         );
 456                         name = Source;
 457                         sourceTree = "<group>";
 458                 };
 459                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 460                         isa = PBXGroup;
 461                         children = (
 462                                 8DD76F6C0486A84900D96B5E /* mothur */,
 463                         );
 464                         name = Products;
 465                         sourceTree = "<group>";
 466                 };
 467                 37D928A60F2133C0001D4494 /* calculators */ = {
 468                         isa = PBXGroup;
 469                         children = (
 470                                 37D927BE0F21331F001D4494 /* calculator.h */,
 471                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 472                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 473                                 37D927B90F21331F001D4494 /* ace.h */,
 474                                 37D927B80F21331F001D4494 /* ace.cpp */,
 475                                 EB1216860F619B83004A865F /* bergerparker.h */,
 476                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
 477                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 478                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 479                                 EB1216E30F61ACFB004A865F /* bstick.h */,
 480                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
 481                                 37D927C00F21331F001D4494 /* chao1.h */,
 482                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 483                                 375873E60F7D63E90040F377 /* coverage.h */,
 484                                 375873E50F7D63E90040F377 /* coverage.cpp */,
 485                                 EB9303F70F53517300E8EF26 /* geom.h */,
 486                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
 487                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
 488                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
 489                                 EB6E68170F5F1C780044E17B /* qstat.h */,
 490                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
 491                                 37D927E80F21331F001D4494 /* jackknife.h */,
 492                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 493                                 375873F90F7D64AB0040F377 /* nseqs.h */,
 494                                 37D927F50F21331F001D4494 /* npshannon.h */,
 495                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 496                                 379294880F2E258500B9034A /* parsimony.h */,
 497                                 379294890F2E258500B9034A /* parsimony.cpp */,
 498                                 37D928020F21331F001D4494 /* rarecalc.h */,
 499                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 500                                 37D9281F0F21331F001D4494 /* shannon.h */,
 501                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 502                                 37D928230F21331F001D4494 /* sharedace.h */,
 503                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 504                                 37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */,
 505                                 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */,
 506                                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
 507                                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
 508                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
 509                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
 510                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 511                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 512                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 513                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 514                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 515                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 516                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 517                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 518                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
 519                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
 520                                 375874000F7D64EF0040F377 /* sharedkulczynski.h */,
 521                                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
 522                                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
 523                                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
 524                                 375874010F7D64EF0040F377 /* sharedlennon.h */,
 525                                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
 526                                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
 527                                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
 528                                 375874090F7D64FC0040F377 /* sharedochiai.h */,
 529                                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
 530                                 3758740A0F7D64FC0040F377 /* sharednseqs.h */,
 531                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 532                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 533                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 534                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 535                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 536                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 537                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 538                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 539                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 540                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 541                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 542                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 543                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 544                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 545                                 37D928410F21331F001D4494 /* simpson.h */,
 546                                 37D928400F21331F001D4494 /* simpson.cpp */,
 547                                 37D928430F21331F001D4494 /* sobs.h */,
 548                                 374610810F40652400460C57 /* unweighted.h */,
 549                                 374610820F40652400460C57 /* unweighted.cpp */,
 550                                 37D9284E0F21331F001D4494 /* uvest.h */,
 551                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 552                                 3746107C0F4064D100460C57 /* weighted.h */,
 553                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 554                         );
 555                         name = calculators;
 556                         sourceTree = "<group>";
 557                 };
 558                 37D928A90F2133E5001D4494 /* commands */ = {
 559                         isa = PBXGroup;
 560                         children = (
 561                                 37D927CD0F21331F001D4494 /* command.hpp */,
 562                                 37C1D9710F86506E0059E3F0 /* binsequencecommand.h */,
 563                                 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */,
 564                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 565                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 566                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 567                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 568                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 569                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 570                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 571                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 572                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 573                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 574                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 575                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 576                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 577                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 578                                 375873F10F7D64800040F377 /* heatmapcommand.h */,
 579                                 375873F00F7D64800040F377 /* heatmapcommand.cpp */,
 580                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 581                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 582                                 375873F40F7D648F0040F377 /* libshuffcommand.h */,
 583                                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
 584                                 375873F60F7D649C0040F377 /* nocommands.cpp */,
 585                                 375873F70F7D649C0040F377 /* nocommands.h */,
 586                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 587                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 588                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 589                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 590                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 591                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 592                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 593                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 594                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 595                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 596                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 597                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 598                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 599                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 600                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 601                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 602                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 603                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 604                                 37D928470F21331F001D4494 /* summarycommand.h */,
 605                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 606                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 607                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 608                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 609                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 610                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 611                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 612                                 37519A9F0F810D0200FED5E8 /* venncommand.h */,
 613                                 37519AA00F810D0200FED5E8 /* venncommand.cpp */,
 614                         );
 615                         name = commands;
 616                         sourceTree = "<group>";
 617                 };
 618                 37D928AC0F213420001D4494 /* containers */ = {
 619                         isa = PBXGroup;
 620                         children = (
 621                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 622                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 623                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 624                                 375873EA0F7D64520040F377 /* fullmatrix.h */,
 625                                 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
 626                                 37D927E20F21331F001D4494 /* groupmap.h */,
 627                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 628                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 629                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 630                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 631                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 632                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 633                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 634                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 635                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 636                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 637                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 638                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 639                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 640                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 641                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 642                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 643                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 644                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 645                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 646                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 647                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 648                                 379293C10F2DE73400B9034A /* treemap.h */,
 649                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 650                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 651                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 652                         );
 653                         name = containers;
 654                         sourceTree = "<group>";
 655                 };
 656                 37D928B10F213472001D4494 /* errorcheckor */ = {
 657                         isa = PBXGroup;
 658                         children = (
 659                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 660                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 661                                 37D928500F21331F001D4494 /* validcalculator.h */,
 662                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 663                                 37D928520F21331F001D4494 /* validcommands.h */,
 664                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 665                                 37D928540F21331F001D4494 /* validparameter.h */,
 666                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 667                         );
 668                         name = errorcheckor;
 669                         sourceTree = "<group>";
 670                 };
 671                 C6859E8C029090F304C91782 /* Documentation */ = {
 672                         isa = PBXGroup;
 673                         children = (
 674                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 675                         );
 676                         name = Documentation;
 677                         sourceTree = "<group>";
 678                 };
 679 /* End PBXGroup section */
 680
 681 /* Begin PBXNativeTarget section */
 682                 8DD76F620486A84900D96B5E /* mothur */ = {
 683                         isa = PBXNativeTarget;
 684                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 685                         buildPhases = (
 686                                 8DD76F640486A84900D96B5E /* Sources */,
 687                                 8DD76F660486A84900D96B5E /* Frameworks */,
 688                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 689                         );
 690                         buildRules = (
 691                         );
 692                         dependencies = (
 693                         );
 694                         name = mothur;
 695                         productInstallPath = "$(HOME)/bin";
 696                         productName = Mothur;
 697                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 698                         productType = "com.apple.product-type.tool";
 699                 };
 700 /* End PBXNativeTarget section */
 701
 702 /* Begin PBXProject section */
 703                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 704                         isa = PBXProject;
 705                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 706                         compatibilityVersion = "Xcode 3.0";
 707                         hasScannedForEncodings = 1;
 708                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 709                         projectDirPath = "";
 710                         projectRoot = "";
 711                         targets = (
 712                                 8DD76F620486A84900D96B5E /* mothur */,
 713                         );
 714                 };
 715 /* End PBXProject section */
 716
 717 /* Begin PBXSourcesBuildPhase section */
 718                 8DD76F640486A84900D96B5E /* Sources */ = {
 719                         isa = PBXSourcesBuildPhase;
 720                         buildActionMask = 2147483647;
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 801                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
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 803                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
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 807                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
 808                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
 809                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
 810                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
 811                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
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 817                                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
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 821                                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
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 827                                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
 828                                 37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */,
 829                                 37519AA10F810D0200FED5E8 /* venncommand.cpp in Sources */,
 830                                 37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */,
 831                                 37C1D9730F86506E0059E3F0 /* binsequencecommand.cpp in Sources */,
 832                         );
 833                         runOnlyForDeploymentPostprocessing = 0;
 834                 };
 835 /* End PBXSourcesBuildPhase section */
 836
 837 /* Begin XCBuildConfiguration section */
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 851                                 PRODUCT_NAME = mothur;
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 854                         name = Debug;
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