Mothur.xcodeproj/project.pbxproj

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 209                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
 210                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
 211                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
 212                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
 213                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
 214                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
 215                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
 216                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
 217                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
 218                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
 219                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
 220                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
 221                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
 222                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
 223                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
 224                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
 225                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
 226                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
 227                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
 228                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
 229                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
 230                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
 231                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
 232                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
 233                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
 234                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
 235                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
 236                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
 237                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
 238                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
 239                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
 240                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
 241                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
 242                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
 243                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
 244                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
 245                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
 246                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
 247                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
 248                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
 249                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
 250                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
 251                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
 252                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
 253                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
 254                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
 255                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
 256                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
 257                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
 258                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
 259                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
 260                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
 261                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
 262                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
 263                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
 264                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
 265                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
 266                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
 267                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
 268                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
 269                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
 270                 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
 271                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
 272                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
 273                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
 274                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
 275                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
 276                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
 277                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
 278                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
 279                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
 280                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
 281                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
 282                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
 283                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
 284                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
 285                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
 286                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
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 288                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
 289                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
 290                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
 291                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
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 293                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
 294                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
 295                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
 296                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
 297                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
 298                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
 299                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
 300                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = "<group>"; };
 301                 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
 302                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
 303                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
 304                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
 305                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 306                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
 307                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
 308                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
 309                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
 310                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
 311                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
 312                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
 313 /* End PBXFileReference section */
 314
 315 /* Begin PBXFrameworksBuildPhase section */
 316                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 317                         isa = PBXFrameworksBuildPhase;
 318                         buildActionMask = 2147483647;
 319                         files = (
 320                         );
 321                         runOnlyForDeploymentPostprocessing = 0;
 322                 };
 323 /* End PBXFrameworksBuildPhase section */
 324
 325 /* Begin PBXGroup section */
 326                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 327                         isa = PBXGroup;
 328                         children = (
 329                                 08FB7795FE84155DC02AAC07 /* Source */,
 330                                 C6859E8C029090F304C91782 /* Documentation */,
 331                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 332                         );
 333                         name = Mothur;
 334                         sourceTree = "<group>";
 335                 };
 336                 08FB7795FE84155DC02AAC07 /* Source */ = {
 337                         isa = PBXGroup;
 338                         children = (
 339                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 340                                 37D928A60F2133C0001D4494 /* calculators */,
 341                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 342                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 343                                 37D928A90F2133E5001D4494 /* commands */,
 344                                 37D927C60F21331F001D4494 /* collect.h */,
 345                                 37D927C50F21331F001D4494 /* collect.cpp */,
 346                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 347                                 37D928AC0F213420001D4494 /* containers */,
 348                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 349                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 350                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 351                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 352                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 353                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 354                                 37D927D40F21331F001D4494 /* database.hpp */,
 355                                 37D927D30F21331F001D4494 /* database.cpp */,
 356                                 37D927D60F21331F001D4494 /* display.h */,
 357                                 37D927D80F21331F001D4494 /* engine.hpp */,
 358                                 37D927D70F21331F001D4494 /* engine.cpp */,
 359                                 37D928B10F213472001D4494 /* errorcheckor */,
 360                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 361                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 362                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 363                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 364                                 37D927E60F21331F001D4494 /* inputdata.h */,
 365                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 366                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 367                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 368                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 369                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 370                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 371                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 372                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 373                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 374                                 37D927F60F21331F001D4494 /* observable.h */,
 375                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 376                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 377                                 37D928040F21331F001D4494 /* raredisplay.h */,
 378                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 379                                 37D928060F21331F001D4494 /* rarefact.h */,
 380                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 381                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 382                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 383                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 384                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 385                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 386                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 387                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 388                                 37D928210F21331F001D4494 /* shared.h */,
 389                                 37D928200F21331F001D4494 /* shared.cpp */,
 390                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 391                                 37D928480F21331F001D4494 /* summarydata.h */,
 392                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 393                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 394                         );
 395                         name = Source;
 396                         sourceTree = "<group>";
 397                 };
 398                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 399                         isa = PBXGroup;
 400                         children = (
 401                                 8DD76F6C0486A84900D96B5E /* mothur */,
 402                         );
 403                         name = Products;
 404                         sourceTree = "<group>";
 405                 };
 406                 37D928A60F2133C0001D4494 /* calculators */ = {
 407                         isa = PBXGroup;
 408                         children = (
 409                                 37D927BE0F21331F001D4494 /* calculator.h */,
 410                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 411                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 412                                 37D927B90F21331F001D4494 /* ace.h */,
 413                                 37D927B80F21331F001D4494 /* ace.cpp */,
 414                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 415                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 416                                 37D927C00F21331F001D4494 /* chao1.h */,
 417                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 418                                 374CD6EF0F65A4C100D90B4A /* coverage.h */,
 419                                 374CD6F00F65A4C100D90B4A /* coverage.cpp */,
 420                                 37D927E80F21331F001D4494 /* jackknife.h */,
 421                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 422                                 37D927F50F21331F001D4494 /* npshannon.h */,
 423                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 424                                 370936DE0F6E7A4A00EB4C2C /* nseqs.h */,
 425                                 379294880F2E258500B9034A /* parsimony.h */,
 426                                 379294890F2E258500B9034A /* parsimony.cpp */,
 427                                 37D928020F21331F001D4494 /* rarecalc.h */,
 428                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 429                                 37D9281F0F21331F001D4494 /* shannon.h */,
 430                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 431                                 37D928230F21331F001D4494 /* sharedace.h */,
 432                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 433                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 434                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 435                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 436                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 437                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 438                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 439                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 440                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 441                                 3709370A0F6E7FC100EB4C2C /* sharednseqs.h */,
 442                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 443                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 444                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 445                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 446                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 447                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 448                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 449                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 450                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 451                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 452                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 453                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 454                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 455                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 456                                 37D928410F21331F001D4494 /* simpson.h */,
 457                                 37D928400F21331F001D4494 /* simpson.cpp */,
 458                                 37D928430F21331F001D4494 /* sobs.h */,
 459                                 374610810F40652400460C57 /* unweighted.h */,
 460                                 374610820F40652400460C57 /* unweighted.cpp */,
 461                                 37D9284E0F21331F001D4494 /* uvest.h */,
 462                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 463                                 3746107C0F4064D100460C57 /* weighted.h */,
 464                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 465                         );
 466                         name = calculators;
 467                         sourceTree = "<group>";
 468                 };
 469                 37D928A90F2133E5001D4494 /* commands */ = {
 470                         isa = PBXGroup;
 471                         children = (
 472                                 37D927CD0F21331F001D4494 /* command.hpp */,
 473                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 474                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 475                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 476                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 477                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 478                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 479                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 480                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 481                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 482                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 483                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 484                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 485                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 486                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 487                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 488                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 489                                 374CD63D0F65832000D90B4A /* libshuffcommand.h */,
 490                                 374CD63E0F65832000D90B4A /* libshuffcommand.cpp */,
 491                                 3765B4790F77D15900C3EDC5 /* nocommands.h */,
 492                                 3765B4780F77D15900C3EDC5 /* nocommands.cpp */,
 493                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 494                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 495                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 496                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 497                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 498                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 499                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 500                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 501                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 502                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 503                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 504                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 505                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 506                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 507                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 508                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 509                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 510                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 511                                 37D928470F21331F001D4494 /* summarycommand.h */,
 512                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 513                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 514                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 515                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 516                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 517                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 518                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 519                         );
 520                         name = commands;
 521                         sourceTree = "<group>";
 522                 };
 523                 37D928AC0F213420001D4494 /* containers */ = {
 524                         isa = PBXGroup;
 525                         children = (
 526                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 527                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 528                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 529                                 3782163B0F616079008E1F6D /* fullmatrix.h */,
 530                                 3782163C0F616079008E1F6D /* fullmatrix.cpp */,
 531                                 37D927E20F21331F001D4494 /* groupmap.h */,
 532                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 533                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 534                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 535                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 536                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 537                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 538                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 539                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 540                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 541                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 542                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 543                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 544                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 545                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 546                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 547                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 548                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 549                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 550                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 551                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 552                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 553                                 379293C10F2DE73400B9034A /* treemap.h */,
 554                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 555                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 556                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 557                         );
 558                         name = containers;
 559                         sourceTree = "<group>";
 560                 };
 561                 37D928B10F213472001D4494 /* errorcheckor */ = {
 562                         isa = PBXGroup;
 563                         children = (
 564                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 565                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 566                                 37D928500F21331F001D4494 /* validcalculator.h */,
 567                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 568                                 37D928520F21331F001D4494 /* validcommands.h */,
 569                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 570                                 37D928540F21331F001D4494 /* validparameter.h */,
 571                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 572                         );
 573                         name = errorcheckor;
 574                         sourceTree = "<group>";
 575                 };
 576                 C6859E8C029090F304C91782 /* Documentation */ = {
 577                         isa = PBXGroup;
 578                         children = (
 579                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 580                         );
 581                         name = Documentation;
 582                         sourceTree = "<group>";
 583                 };
 584 /* End PBXGroup section */
 585
 586 /* Begin PBXNativeTarget section */
 587                 8DD76F620486A84900D96B5E /* mothur */ = {
 588                         isa = PBXNativeTarget;
 589                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 590                         buildPhases = (
 591                                 8DD76F640486A84900D96B5E /* Sources */,
 592                                 8DD76F660486A84900D96B5E /* Frameworks */,
 593                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 594                         );
 595                         buildRules = (
 596                         );
 597                         dependencies = (
 598                         );
 599                         name = mothur;
 600                         productInstallPath = "$(HOME)/bin";
 601                         productName = Mothur;
 602                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 603                         productType = "com.apple.product-type.tool";
 604                 };
 605 /* End PBXNativeTarget section */
 606
 607 /* Begin PBXProject section */
 608                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 609                         isa = PBXProject;
 610                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 611                         compatibilityVersion = "Xcode 3.0";
 612                         hasScannedForEncodings = 1;
 613                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 614                         projectDirPath = "";
 615                         projectRoot = "";
 616                         targets = (
 617                                 8DD76F620486A84900D96B5E /* mothur */,
 618                         );
 619                 };
 620 /* End PBXProject section */
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 622 /* Begin PBXSourcesBuildPhase section */
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 624                         isa = PBXSourcesBuildPhase;
 625                         buildActionMask = 2147483647;
 626                         files = (
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 631                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 632                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 633                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 634                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 635                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 636                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 637                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
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 639                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 640                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 641                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
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 643                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
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 646                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
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 648                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 649                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
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 654                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
 655                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
 656                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
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 660                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
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 662                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
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 668                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 669                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
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 680                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
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 682                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 683                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
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 689                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 690                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 691                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
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 702                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
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 705                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 706                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
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 709                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
 710                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
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 759                                 INSTALL_MODE_FLAG = "a-w,a+rX";
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 783 /* Begin XCConfigurationList section */
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