1 #+PROPERTY: header-args:emacs-lisp :tangle don-configuration.el
4 # if for some reason, things get pear-shaped, we want to be able to
5 # enter the debugger by sending -USR2 to emacs
8 (setq debug-on-event 'siguser2)
10 * Initial startup stuff
11 ** Disable startup screen
12 #+BEGIN_SRC emacs-lisp
13 (setq inhibit-startup-screen t)
16 #+BEGIN_SRC emacs-lisp
17 ; (if (fboundp 'menu-bar-mode) (menu-bar-mode -1))
18 (if (fboundp 'tool-bar-mode) (tool-bar-mode -1))
19 (if (fboundp 'scroll-bar-mode) (scroll-bar-mode -1))
22 #+BEGIN_SRC emacs-lisp
23 (setq frame-resize-pixelwise t)
24 (add-to-list 'default-frame-alist '(fullscreen . maximixed))
27 ** package repositories and package manager
28 Borrowed from https://github.com/nilcons/emacs-use-package-fast/ to
29 load [[https://github.com/jwiegley/use-package/][use-package]] even faster
30 #+BEGIN_SRC emacs-lisp
31 (setq package-enable-at-startup nil)
32 (setq package--init-file-ensured t)
33 (setq package-archives '(("gnu" . "https://elpa.gnu.org/packages/")
34 ("melpa" . "https://melpa.org/packages/")
35 ("org" . "http://orgmode.org/elpa/") ))
37 (setq use-package-verbose (not (bound-and-true-p byte-compile-current-file))))
38 (mapc #'(lambda (add) (add-to-list 'load-path add))
41 (unless (package-installed-p 'use-package)
42 (package-refresh-contents)
43 (package-install 'use-package))
44 (let ((package-user-dir-real (file-truename package-user-dir)))
45 ;; The reverse is necessary, because outside we mapc
46 ;; add-to-list element-by-element, which reverses.
47 (nreverse (apply #'nconc
48 ;; Only keep package.el provided loadpaths.
49 (mapcar #'(lambda (path)
50 (if (string-prefix-p package-user-dir-real path)
55 (require 'use-package)
60 #+BEGIN_SRC emacs-lisp
63 :commands (paradox-upgrade-packages paradox-list-packages)
64 :config (setq paradox-execute-asynchronously t)
69 #+BEGIN_SRC emacs-lisp
70 (add-to-list 'load-path '"~/lib/emacs_el/")
71 (add-to-list 'load-path '"~/lib/emacs_el/magit-annex")
74 #+BEGIN_SRC emacs-lisp
75 ;; Set the custom file to /dev/null and don't bother to load it
76 (setq custom-file "/dev/null")
80 #+BEGIN_SRC emacs-lisp
81 ;; From http://www.emacswiki.org/emacs/LoadingLispFiles
82 ;; execute conditional code when loading libraries
83 (defmacro with-library (symbol &rest body)
84 `(when (require ,symbol nil t)
86 (put 'with-library 'lisp-indent-function 1)
90 ** Safe Local Variables
91 #+BEGIN_SRC emacs-lisp
92 (setq safe-local-variable-values
93 (quote ((auto-save-default)
95 (cperl-indent-level . 4)
97 (indent-tabs-mode . f)
101 #+BEGIN_SRC emacs-lisp
102 (setq global-mark-ring-max 128
106 (defun don/minibuffer-setup-hook ()
107 (setq gc-cons-threshold most-positive-fixnum))
109 (defun don/minibuffer-exit-hook ()
110 (setq gc-cons-threshold 1048576))
112 (add-hook 'minibuffer-setup-hook #'don/minibuffer-setup-hook)
113 (add-hook 'minibuffer-exit-hook #'don/minibuffer-exit-hook)
117 #+BEGIN_SRC emacs-lisp
118 (use-package hippie-exp
119 :bind* (("M-<SPC>" . hippie-expand))
123 #+BEGIN_SRC emacs-lisp
124 (use-package flyspell
126 :diminish flyspell-mode 🐝
128 (add-hook 'text-mode-hook 'turn-on-flyspell)
129 (add-hook 'c-mode-common-hook 'flyspell-prog-mode)
130 (add-hook 'cperl-mode-hook 'flyspell-prog-mode)
131 (add-hook 'tcl-mode-hook 'flyspell-prog-mode)
133 (setq ispell-program-name "ispell")
138 #+begin_src emacs-lisp :tangle yes
144 #+BEGIN_SRC emacs-lisp
149 #+BEGIN_SRC emacs-lisp
150 (use-package eyebrowse
152 :diminish eyebrowse-mode
153 :init (setq eyebrowse-keymap-prefix (kbd "C-c e"))
155 (setq eyebrowse-wrap-around t)
158 (defun my/eyebrowse-new-window-config ()
162 ;; start at 1 run till 0
163 (let ((j (mod (+ i 1) 10)))
164 (when (and (not done)
165 (not (eyebrowse--window-config-present-p j)))
166 (eyebrowse-switch-to-window-config j)
167 (call-interactively 'eyebrowse-rename-window-config2 j)
172 ;; I don't use latex-preview-pane
173 ;; (require 'latex-preview-pane)
174 ;; (defun my/close-latex-preview-pane-before-eyebrowse-switch ()
175 ;; ;; latex-preview-pane uses window-parameters which are
176 ;; ;; not preserved by eyebrowse, so we close the preview
177 ;; ;; pane before switching, it will be regenerated when we
178 ;; ;; edit the TeX file.
179 ;; (when (lpp/window-containing-preview)
180 ;; (delete-window (lpp/window-containing-preview))))
182 ;; (add-to-list 'eyebrowse-pre-window-switch-hook
183 ;; #'my/close-latex-preview-pane-before-eyebrowse-switch)
185 ;; (my/set-menu-key "[" #'my/eyebrowse-new-window-config)
186 ;; (my/set-menu-key ";" #'eyebrowse-prev-window-config)
187 ;; (my/set-menu-key "'" #'eyebrowse-next-window-config)
188 ;; (my/set-menu-key "]" #'eyebrowse-close-window-config)
189 ;; (my/set-menu-key "\\" #'eyebrowse-rename-window-config)
197 #+BEGIN_SRC emacs-lisp
198 (defun my/vsplit-last-buffer ()
199 "Split the window vertically and display the previous buffer."
201 (split-window-vertically)
203 (switch-to-next-buffer))
205 (defun my/hsplit-last-buffer ()
206 "Split the window horizontally and display the previous buffer."
208 (split-window-horizontally)
210 (switch-to-next-buffer))
212 (bind-key "C-x 2" 'my/vsplit-last-buffer)
213 (bind-key "C-x 3" 'my/hsplit-last-buffer)
215 (setq split-width-threshold 100)
216 (setq split-height-threshold 60)
218 (defun my/split-window-prefer-vertically (window)
219 "If there's only one window (excluding any possibly active
220 minibuffer), then split the current window horizontally."
221 (if (and (one-window-p t)
222 (not (active-minibuffer-window))
223 ( < (frame-width) (frame-height))
225 (let ((split-width-threshold nil))
226 (split-window-sensibly window))
227 (split-window-sensibly window)))
229 (setq split-window-preferred-function #'my/split-window-prefer-vertically)
230 (setq window-combination-resize t)
233 *** Compilation window
235 If there is no compilation window, open one at the bottom, spanning
236 the complete width of the frame. Otherwise, reuse existing window. In
237 the former case, if there was no error the window closes
240 #+BEGIN_SRC emacs-lisp
241 (add-to-list 'display-buffer-alist
242 `(,(rx bos "*compilation*" eos)
243 (display-buffer-reuse-window
244 display-buffer-in-side-window)
245 (reusable-frames . visible)
247 (window-height . 0.4)))
250 #+BEGIN_SRC emacs-lisp
251 (defun my/compilation-exit-autoclose (status code msg)
252 ;; If M-x compile exists with a 0
253 (when (and (eq status 'exit) (zerop code))
254 ;; and delete the *compilation* window
255 (let ((compilation-window (get-buffer-window (get-buffer "*compilation*"))))
256 (when (and (not (window-at-side-p compilation-window 'top))
257 (window-at-side-p compilation-window 'left)
258 (window-at-side-p compilation-window 'right))
259 (delete-window compilation-window))))
260 ;; Always return the anticipated result of compilation-exit-message-function
263 ;; Specify my function (maybe I should have done a lambda function)
264 (setq compilation-exit-message-function #'my/compilation-exit-autoclose)
267 If you change the variable ~compilation-scroll-output~ to a ~non-nil~
268 value, the compilation buffer scrolls automatically to follow the
269 output. If the value is ~first-error~, scrolling stops when the first
270 error appears, leaving point at that error. For any other non-nil
271 value, scrolling continues until there is no more output.
273 #+BEGIN_SRC emacs-lisp
274 (setq compilation-scroll-output 'first-error)
277 ** Mode line cleaning
279 #+BEGIN_SRC emacs-lisp
280 (use-package diminish
285 #+BEGIN_SRC emacs-lisp
292 #+BEGIN_SRC emacs-lisp
295 :bind (("C-c C-<SPC>" . avy-goto-word-or-subword-1)
296 ("C-c j j" . avy-goto-word-or-subword-1)
297 ("M-g g" . avy-goto-line))
298 :config (progn (setq avy-background t))
301 *** Ace-link (jumping to links)
302 #+BEGIN_SRC emacs-lisp
303 (use-package ace-link
305 ; bind o in most modes
306 :config (ace-link-setup-default))
308 *** Jumping through edit points (goto-chg)
309 #+BEGIN_SRC emacs-lisp
310 (use-package goto-chg
312 :bind (("C-c j ," . goto-last-change)
313 ("C-c j ." . goto-last-change-reverse))
316 *** Jumping to bookmarks (visible bookmarks, bm)
317 #+BEGIN_SRC emacs-lisp
320 :bind (("C-c j b ." . bm-next)
321 ("C-c j b ," . bm-previous)
322 ("C-c j b SPC" . bm-toggle)))
327 #+BEGIN_SRC emacs-lisp
328 (use-package yasnippet
330 :diminish yas-minor-mode
333 (setq yas-verbosity 1)
334 (define-key yas-minor-mode-map (kbd "<tab>") nil)
335 (define-key yas-minor-mode-map (kbd "TAB") nil)
336 (define-key yas-minor-mode-map (kbd "<backtab>") 'yas-expand)
337 (setq yas-snippet-dirs '("~/lib/emacs_el/snippets/"
338 "~/lib/emacs_el/yasnippet-snippets/snippets/"))
339 (add-to-list 'hippie-expand-try-functions-list
340 'yas-hippie-try-expand)
345 #+BEGIN_SRC emacs-lisp
346 (use-package auto-yasnippet
347 :bind (("H-w" . aya-create)
354 #+BEGIN_SRC emacs-lisp
356 (use-package tinyprocmail
357 :load-path "~/lib/emacs_el/tiny-tools/lisp/tiny"
358 :mode (".procmailrc" . turn-on-tinyprocmail-mode)
363 #+BEGIN_SRC emacs-lisp :tangle don-configuration.el
366 :bind (("C-x g" . magit-status)
367 ("C-x C-g" . magit-status))
369 ;; refine diffs always (hilight words)
370 (setq magit-diff-refine-hunk nil)
372 (use-package magit-annex
374 :load-path "~/lib/emacs_el/magit-annex/"
376 (use-package magit-vcsh
377 :ensure f ; currently not in melpa, so don't try to install
378 :load-path "~/lib/emacs_el/magit-vcsh/"
383 #+BEGIN_SRC emacs-lisp
384 (use-package cperl-mode
387 ;; Use c-mode for perl .xs files
388 (add-to-list 'auto-mode-alist '("\\.xs\\'" . c-mode))
389 (add-to-list 'auto-mode-alist '("\\.\\([pP][Llm]\\|al\\)\\'" . cperl-mode))
390 (add-to-list 'interpreter-mode-alist '("perl" . cperl-mode))
391 (add-to-list 'interpreter-mode-alist '("perl5" . cperl-mode))
392 (add-to-list 'interpreter-mode-alist '("miniperl" . cperl-mode))
395 cperl-auto-newline nil
396 cperl-auto-newline-after-colon nil
397 cperl-continued-statement-offset 4
398 cperl-brace-offset -1
399 cperl-continued-brace-offset 0
400 cperl-label-offset -4
401 cperl-highlight-variables-indiscriminately t
402 cperl-electric-lbrace-space nil
403 cperl-indent-parens-as-block nil
404 cperl-close-paren-offset -1
405 cperl-tab-always-indent t)
406 ;;(add-hook 'cperl-mode-hook (lambda () (cperl-set-style "PerlStyle")))
411 #+BEGIN_SRC emacs-lisp
412 (use-package markdown-mode
414 :mode (("\\.md\\'" . markdown-mode)
415 ("\\.mdwn\\'" . markdown-mode)
416 ("README\\.md\\'" . gfm-mode)
419 (setq markdown-enable-math t)
420 (setq markdown-follow-wiki-link-on-enter nil)
421 (bind-key "M-." #'markdown-jump markdown-mode-map)
422 (add-hook 'markdown-mode-hook #'flyspell-mode)
423 (add-hook 'markdown-mode-hook #'outline-minor-mode)
424 (bind-key "C-<tab>" #'outline-cycle markdown-mode-map)
429 #+BEGIN_SRC emacs-lisp
430 ; load sql-indent when sql is loaded
432 :mode (("\\.sql\\'" . sql-mode))
434 (require sql-indent))
437 #+BEGIN_SRC emacs-lisp
439 :commands ediff ediff3
442 ;; ediff configuration
443 ;; don't use the multi-window configuration
444 (setq ediff-window-setup-function 'ediff-setup-windows-plain)
447 ** VCL --editing varnish configuration files
448 #+BEGIN_SRC emacs-lisp
449 (use-package vcl-mode
456 #+BEGIN_SRC emacs-lisp
457 (defun malb/helm-omni (&rest arg)
458 ;; just in case someone decides to pass an argument, helm-omni won't fail.
460 (unless helm-source-buffers-list
461 (setq helm-source-buffers-list
462 (helm-make-source "Buffers" 'helm-source-buffers)))
466 (if (projectile-project-p)
467 '(helm-source-projectile-buffers-list
468 helm-source-buffers-list)
469 '(helm-source-buffers-list)) ;; list of all open buffers
471 `(((name . "Virtual Workspace")
472 (candidates . ,(--map (cons (eyebrowse-format-slot it) (car it))
473 (eyebrowse--get 'window-configs)))
474 (action . (lambda (candidate)
475 (eyebrowse-switch-to-window-config candidate)))))
477 (if (projectile-project-p)
478 '(helm-source-projectile-recentf-list
480 '(helm-source-recentf)) ;; all recent files
482 ;; always make some common files easily accessible
483 ;;'(((name . "Common Files")
484 ;; (candidates . malb/common-file-targets)
485 ;; (action . (("Open" . (lambda (x) (find-file (eval x))))))))
487 '(helm-source-files-in-current-dir
489 helm-source-bookmarks
490 helm-source-buffer-not-found ;; ask to create a buffer otherwise
492 "*Helm all the things*"))
496 :bind (("M-x" . helm-M-x)
497 ("C-x C-f" . helm-find-files)
498 ("C-x b" . helm-buffers-list) ; malb/helm-omni)
499 ("C-x C-b" . helm-buffers-list) ; malb/helm-omni)
500 ("C-c <SPC>" . helm-all-mark-rings))
502 (require 'helm-config)
503 (require 'helm-for-files)
504 (require 'helm-bookmark)
507 (define-key global-map [remap find-file] 'helm-find-files)
508 (define-key global-map [remap occur] 'helm-occur)
509 (define-key global-map [remap list-buffers] 'helm-buffers-list)
510 (define-key global-map [remap dabbrev-expand] 'helm-dabbrev)
511 (unless (boundp 'completion-in-region-function)
512 (define-key lisp-interaction-mode-map [remap completion-at-point] 'helm-lisp-completion-at-point)
513 (define-key emacs-lisp-mode-map [remap completion-at-point] 'helm-lisp-completion-at-point))
514 (add-hook 'kill-emacs-hook #'(lambda () (and (file-exists-p "$TMP") (delete-file "$TMP"))))
519 [[https://github.com/PythonNut/helm-flx][helm-flx]] implements intelligent helm fuzzy sorting, provided by [[https://github.com/lewang/flx][flx]].
521 #+BEGIN_SRC emacs-lisp
522 (use-package helm-flx
525 ;; these are helm configs, but they kind of fit here nicely
526 (setq helm-M-x-fuzzy-match t
527 helm-bookmark-show-location t
528 helm-buffers-fuzzy-matching t
529 helm-completion-in-region-fuzzy-match t
530 helm-file-cache-fuzzy-match t
531 helm-imenu-fuzzy-match t
532 helm-mode-fuzzy-match t
533 helm-locate-fuzzy-match nil
535 helm-recentf-fuzzy-match nil
536 helm-semantic-fuzzy-match t)
540 #+BEGIN_SRC emacs-lisp
542 ;;; stolen from https://github.com/malb/emacs.d/blob/master/malb.org
543 (defun malb/helm-swoop-pre-fill ()
544 (thing-at-point 'symbol))
545 (defvar malb/helm-swoop-ignore-major-mode "List of major modes to ignore for helm-swoop")
546 (setq malb/helm-swoop-ignore-major-mode '(dired-mode
547 paradox-menu-mode doc-view-mode pdf-view-mode
548 mu4e-headers-mode org-mode markdown-mode latex-mode
549 ein:notebook-multilang-mode))
551 (defun malb/swoop-or-search ()
553 (if (or (> (buffer-size) 1048576) ;; helm-swoop can be slow on big buffers
554 (memq major-mode malb/helm-swoop-ignore-major-mode))
558 (use-package helm-swoop
561 :bind (("C-c o" . helm-multi-swoop-org)
562 ("C-s" . malb/swoop-or-search)
563 ("C-M-s" . helm-multi-swoop-all))
566 (setq helm-swoop-pre-input-function #'malb/helm-swoop-pre-fill
567 helm-swoop-split-with-multiple-windows nil
568 helm-swoop-split-direction #'split-window-horizontally
569 helm-swoop-split-window-function 'helm-default-display-buffer
570 helm-swoop-speed-or-color t)
572 ;; https://emacs.stackexchange.com/questions/28790/helm-swoop-how-to-make-it-behave-more-like-isearch
573 (defun malb/helm-swoop-C-s ()
575 (if (boundp 'helm-swoop-pattern)
576 (if (equal helm-swoop-pattern "")
577 (previous-history-element 1)
581 (bind-key "C-S-s" #'helm-swoop-from-isearch isearch-mode-map)
582 (bind-key "C-S-s" #'helm-multi-swoop-all-from-helm-swoop helm-swoop-map)
583 (bind-key "C-r" #'helm-previous-line helm-swoop-map)
584 (bind-key "C-s" #'malb/helm-swoop-C-s helm-swoop-map)
585 (bind-key "C-r" #'helm-previous-line helm-multi-swoop-map)
586 (bind-key "C-s" #'malb/helm-swoop-C-s helm-multi-swoop-map))
591 #+BEGIN_SRC emacs-lisp
594 :config (setq helm-ag-base-command "ag --nocolor --nogroup"
595 helm-ag-command-option "--all-text"
596 helm-ag-insert-at-point 'symbol
597 helm-ag-fuzzy-match t
598 helm-ag-use-temp-buffer t
599 helm-ag-use-grep-ignore-list t
600 helm-ag-use-agignore t))
603 #+BEGIN_SRC emacs-lisp
604 (use-package helm-descbinds
606 :bind ("C-h b" . helm-descbinds)
607 :init (fset 'describe-bindings 'helm-descbinds))
611 #+BEGIN_SRC emacs-lisp
612 (use-package helm-c-yasnippet
614 :bind ("C-c h y" . helm-yas-complete)
616 (setq helm-yas-space-match-any-greedy t)))
619 #+BEGIN_SRC emacs-lisp
620 (use-package helm-org-rifle
623 (defun malb/helm-org-rifle-agenda-files (arg)
625 (let ((current-prefix-arg nil))
627 ((equal arg 4) (call-interactively #'helm-org-rifle-agenda-files nil))
628 ((equal arg 16) (helm-org-rifle-occur-agenda-files))
629 (t (helm-org-agenda-files-headings)))))))
632 This can be used to link things pretty quickly if necessary
633 #+BEGIN_SRC emacs-lisp
634 (use-package helm-google
636 :bind ("C-c h g" . helm-google)
638 (progn (add-to-list 'helm-google-actions
639 '("Copy URL" . (lambda (candidate)
641 (replace-regexp-in-string
642 "https://.*q=\\(.*\\)\&sa=.*"
648 (add-to-list 'helm-google-actions
649 '("Org Store Link" . (lambda (candidate)
650 (let ((title (car (split-string candidate "[\n]+")))
652 (replace-regexp-in-string
653 "https://.*q=\\(.*\\)\&sa=.*"
655 (push (list url title) org-stored-links))))
660 ** Projectile -- Project management
661 #+begin_src emacs-lisp
662 (use-package projectile
664 :bind (("<f5>" . projectile-compile-project)
665 ("<f6>" . next-error))
667 (use-package magit :ensure t)
668 (require 'helm-projectile)
671 (setq projectile-make-test-cmd "make check"
672 projectile-switch-project-action 'helm-projectile
673 projectile-mode-line '(:eval (format "»{%s}" (projectile-project-name))))
675 (projectile-global-mode)))
679 #+begin_src emacs-lisp
680 (use-package helm-projectile
683 (defvar malb/helm-source-file-not-found
684 (helm-build-dummy-source
689 'helm-projectile-sources-list
690 malb/helm-source-file-not-found t)
692 (helm-delete-action-from-source
693 "Grep in projects `C-s'"
694 helm-source-projectile-projects)
696 (helm-add-action-to-source
697 "Grep in projects `C-s'"
698 'helm-do-ag helm-source-projectile-projects 4)))
701 #+BEGIN_SRC emacs-lisp
704 :bind ("M-z" . avy-zap-up-to-char-dwim))
707 #+BEGIN_SRC emacs-lisp
709 :bind (("C-c 2" . my/hydra-orgmodes/body)
710 ("C-c @" . my/hydra-orgmodes/body)
711 ("C-c #" . my/hydra-outline/body)
712 ("C-c 3" . my/hydra-outline/body)
715 (defhydra my/hydra-orgmodes (:color blue :hint nil)
717 _n_: notes _c_: chaim _w_: wildman _o_: ool
718 _u_: uddin _s_: steve _r_: refile _f_: fh
719 _p_: read papers _R_: paper notes
724 ("n" (find-file "~/projects/org-notes/notes.org"))
725 ("c" (find-file "~/projects/org-notes/chaim.org"))
726 ("w" (find-file "~/projects/org-notes/wildman.org"))
727 ("u" (find-file "~/projects/org-notes/uddin.org"))
728 ("o" (find-file "~/projects/org-notes/ool.org"))
729 ("f" (find-file "~/projects/org-notes/fh.org"))
730 ("s" (find-file "~/projects/org-notes/sndservers.org"))
731 ("r" (find-file "~/projects/org-notes/refile.org"))
732 ("p" (find-file "~/projects/research/papers_to_read.org"))
733 ("R" (find-file "~/projects/research/paper_notes.org"))
734 ("h" (find-file "~/projects/org-notes/hpcbio.org"))
739 ;; from https://github.com/abo-abo/hydra/wiki/Emacs
740 (defhydra my/hydra-outline (:color pink :hint nil)
743 ^^^^^^------------------------------------------------------
744 _q_: sublevels _a_: all _u_: up
745 _t_: body _e_: entry _n_: next visible
746 _o_: other _i_: children _p_: previous visible
747 _c_: entry _k_: branches _f_: forward same level
748 _l_: leaves _s_: subtree _b_: backward same level
753 ("q" outline-hide-sublevels) ; Hide everything but the top-level headings
754 ("t" outline-hide-body) ; Hide everything but headings (all body lines)
755 ("o" outline-hide-other) ; Hide other branches
756 ("c" outline-hide-entry) ; Hide this entry's body
757 ("l" outline-hide-leaves) ; Hide body lines in this entry and sub-entries
758 ("d" outline-hide-subtree) ; Hide everything in this entry and sub-entries
760 ("a" outline-show-all) ; Show (expand) everything
761 ("e" outline-show-entry) ; Show this heading's body
762 ("i" outline-show-children) ; Show this heading's immediate child sub-headings
763 ("k" outline-show-branches) ; Show all sub-headings under this heading
764 ("s" outline-show-subtree) ; Show (expand) everything in this heading & below
766 ("u" outline-up-heading) ; Up
767 ("n" outline-next-visible-heading) ; Next
768 ("p" outline-previous-visible-heading) ; Previous
769 ("f" outline-forward-same-level) ; Forward - same level
770 ("b" outline-backward-same-level) ; Backward - same level
776 #+BEGIN_SRC emacs-lisp
779 (add-to-list 'tramp-methods '("vcsh"
780 (tramp-login-program "vcsh")
784 (tramp-remote-shell "/bin/sh")
785 (tramp-remote-shell-args
789 #+BEGIN_SRC emacs-lisp
793 (setq-default reftex-default-bibliography
794 '("~/projects/research/references.bib")))
797 #+BEGIN_SRC emacs-lisp
799 :config (setq bibtex-user-optional-fields
800 (quote (("annote" "Personal annotation (ignored)")
808 #+BEGIN_SRC emacs-lisp
813 ; (add-to-list 'TeX-style-path '"/home/don/lib/emacs_el/auctex/style")
814 ;; REFTEX (much enhanced management of cross-ref, labels, etc)
815 ;; http://www.strw.leidenuniv.nl/~dominik/Tools/reftex/
816 ; (autoload 'reftex-mode "reftex" "RefTeX Minor Mode" t)
817 ; (autoload 'turn-on-reftex "reftex" "RefTeX Minor Mode" nil)
818 ; (autoload 'reftex-citation "reftex-cite" "Make citation" nil)
819 ; (autoload 'reftex-index-phrase-mode "reftex-index" "Phrase mode" t)
820 (add-hook 'LaTeX-mode-hook 'turn-on-reftex) ; with AUCTeX LaTeX mode
821 (add-hook 'latex-mode-hook 'turn-on-reftex) ; with Emacs latex mode
822 (add-hook 'LaTeX-mode-hook 'outline-minor-mode) ; with AUCTeX LaTeX mode
823 (add-hook 'latex-mode-hook 'outline-minor-mode) ; with Emacs latex mode
825 (setq-default reftex-plug-into-AUCTeX t)
826 ;; support fake section headers
827 (setq TeX-outline-extra
833 ;; add font locking to the headers
834 (font-lock-add-keywords
836 '(("^%\\(chapter\\|\\(sub\\|subsub\\)?section\\|paragraph\\)"
837 0 'font-lock-keyword-face t)
838 ("^%chapter{\\(.*\\)}" 1 'font-latex-sectioning-1-face t)
839 ("^%section{\\(.*\\)}" 1 'font-latex-sectioning-2-face t)
840 ("^%subsection{\\(.*\\)}" 1 'font-latex-sectioning-3-face t)
841 ("^%subsubsection{\\(.*\\)}" 1 'font-latex-sectioning-4-face t)
842 ("^%paragraph{\\(.*\\)}" 1 'font-latex-sectioning-5-face t)))
844 ;; use smart quotes by default instead of `` and ''
845 ;; taken from http://kieranhealy.org/esk/kjhealy.html
846 (setq TeX-open-quote "“")
847 (setq TeX-close-quote "”")
849 ;; (TeX-add-style-hook
854 ;; (custom-set-variables
855 ;; '(font-latex-user-keyword-classes
858 ;; font-lock-function-name-face 2 (command 1 t))))
860 (setq-default TeX-parse-self t)
861 (setq-default TeX-auto-save t)
862 (setq-default TeX-master nil)
868 (if (boundp 'reftex-ref-style-alist)
870 'reftex-ref-style-alist
871 '("Cleveref" "cleveref"
872 (("\\cref" ?c) ("\\Cref" ?C) ("\\cpageref" ?d) ("\\Cpageref" ?D)))))
873 (reftex-ref-style-activate "Cleveref")
875 '("cref" TeX-arg-ref)
876 '("Cref" TeX-arg-ref)
877 '("cpageref" TeX-arg-ref)
878 '("Cpageref" TeX-arg-ref)))))
881 '(add-to-list 'LaTeX-fill-excluded-macros
884 (use-package font-latex
886 (setq font-latex-match-reference-keywords
908 (setq font-latex-fontify-script nil)
909 (setq font-latex-fontify-sectioning (quote color))
910 (setq font-latex-script-display (quote (nil)))
915 #+BEGIN_SRC emacs-lisp
919 :mode ("\\.R\\'" . ess-r-mode)
920 :bind (:map ess-mode-map
921 ("C-c C-R" . dla/ess-region-remote-eval))
923 (autoload 'ess-r-mode "ess-site" nil t)
924 (autoload 'R "ess-site" nil t)
926 ; actually load the rest of ess
928 (defun ess-change-directory (path)
929 "Set the current working directory to PATH for both *R* and Emacs."
930 (interactive "Directory to change to: ")
932 (when (file-exists-p path)
933 (ess-command (concat "setwd(\"" path "\")\n"))
934 ;; use file-name-as-directory to ensure it has trailing /
935 (setq default-directory (file-name-as-directory path))))
936 (add-hook 'ess-mode-hook 'flyspell-prog-mode)
937 ;; outlining support for ess modes
942 (setq outline-regexp "\\(^#\\{4,5\\} \\)\\|\\(^[a-zA-Z0-9_\.]+ ?<- ?function\\)")
943 (defun outline-level ()
944 (cond ((looking-at "^##### ") 1)
945 ((looking-at "^#### ") 2)
946 ((looking-at "^[a-zA-Z0-9_\.]+ ?<- ?function(.*{") 3)
949 (defun dla/ess-region-remote-eval (start end)
950 "Evaluate region in a remote ESS instance"
952 (shell-command-on-region start end "eval_r" (get-buffer-create "***essregionremoteeval***"))
953 kill-buffer "***essregionremoteeval***")
954 ;; Don't restore history or save workspace image
955 '(inferior-R-args "--no-restore-history --no-save")
960 From http://julien.danjou.info/projects/emacs-packages#rainbow-mode, this colorizes color strings
962 #+BEGIN_SRC emacs-lisp
963 (use-package rainbow-mode
964 ;; add ess to the x major mode
965 :config (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[S])
966 (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[R])
971 #+BEGIN_SRC emacs-lisp
972 (use-package polymode
975 (use-package poly-noweb)
976 (use-package poly-markdown)
977 :mode ("\\.Snw" . poly-noweb+r-mode)
978 :mode ("\\.Rnw" . poly-noweb+r-mode)
979 :mode ("\\.Rmd" . poly-markdown+r-mode)
985 #+BEGIN_SRC emacs-lisp
986 (use-package outline-magic)
989 #+BEGIN_SRC emacs-lisp
990 ;; change the outline mode prefix from C-c @ to C-c C-2
991 (setq outline-minor-mode-prefix "C-c C-2")
992 ;;(add-hook 'outline-minor-mode-hook
993 ;; (lambda () (local-set-key (kbd "C-c C-2")
994 ;; outline-mode-prefix-map)))
998 #+BEGIN_SRC emacs-lisp
999 (use-package writeroom-mode
1001 (defun my/writing-mode ()
1002 "Start my writing mode; enable visual-line-mode and auto-fill-mode"
1007 (visual-line-mode -1)
1009 (visual-fill-column-mode -1)
1011 (visual-line-mode 1)
1013 (visual-fill-column-mode 1)
1018 ** GhostText/Atomic Chrome
1019 #+BEGIN_SRC emacs-lisp
1020 (use-package atomic-chrome
1022 (ignore-errors (atomic-chrome-start-server))
1023 (setq atomic-chrome-buffer-open-style 'full)
1028 :ID: 6fcf218b-a762-4c37-9339-a8202ddeb544
1030 [[https://github.com/magnars/multiple-cursors.el][Multiple Cursors]]
1031 #+BEGIN_SRC emacs-lisp
1032 (use-package multiple-cursors
1033 :bind* (("C-;" . mc/mark-all-dwim)
1034 ("C-<" . mc/mark-previous-like-this)
1035 ("C->" . mc/mark-next-like-this)
1036 ("C-S-c C-S-c" . mc/edit-lines))
1040 #+BEGIN_SRC emacs-lisp
1041 (use-package web-mode
1043 (add-to-list 'auto-mode-alist '("\\.tmpl\\'" . web-mode))
1044 (setq web-mode-enable-engine-detection t)
1045 (setq web-mode-engines-alist
1046 '(("template-toolkit" . "\\.tmpl\\'")))
1049 ** Spamassassin Mode
1050 #+BEGIN_SRC emacs-lisp
1051 (use-package spamassassin-mode
1052 :commands spamassassin-mode
1057 #+BEGIN_SRC emacs-lisp
1058 (use-package password-store
1060 :commands password-store-edit password-store-generate
1064 #+BEGIN_SRC emacs-lisp
1068 ;; fix up css mode to not be silly
1069 ;; from http://www.stokebloke.com/wordpress/2008/03/21/css-mode-indent-buffer-fix/
1070 (setq cssm-indent-level 4)
1071 (setq cssm-newline-before-closing-bracket t)
1072 (setq cssm-indent-function #'cssm-c-style-indenter)
1073 (setq cssm-mirror-mode nil))
1076 #+BEGIN_SRC emacs-lisp
1078 :diminish abbrev-mode
1080 ;; load abbreviations from
1081 (setq abbrev-file-name
1082 "~/.emacs_abbrev_def")
1084 ;; read the abbrev file if it exists
1085 (if (file-exists-p abbrev-file-name)
1086 (quietly-read-abbrev-file))
1088 ;; for now, use abbrev mode everywhere
1089 (setq default-abbrev-mode t))
1095 #+BEGIN_SRC emacs-lisp
1096 (use-package message
1098 :diminish (message "✉")
1099 :mode ("muttng-[a-z0-9]+-[0-9]+-" . message-mode)
1100 :mode ("mutt-[a-z0-9]+-[0-9]+-" . message-mode)
1101 :hook 'my/message-mode-settings
1102 :hook 'turn-on-flyspell
1103 :bind (:map message-mode-map
1104 ("C-c C-a" . my/post-attach-file))
1105 :delight (message-mode "✉")
1107 (defun my/message-mode-settings ()
1108 (font-lock-add-keywords nil
1109 '(("^[ \t]*>[ \t]*>[ \t]*>.*$"
1110 (0 'message-multiply-quoted-text-face))
1111 ("^[ \t]*>[ \t]*>.*$"
1112 (0 'message-double-quoted-text-face))))
1115 (defun my/post-attach-file ()
1116 "Prompt for an attachment."
1118 (let ((file (read-file-name "Attach file: " nil nil t nil)))
1119 (my/header-attach-file file "")))
1121 (defun my/header-attach-file (file description)
1122 "Attach a FILE to the current message (works with Mutt).
1123 Argument DESCRIPTION MIME description."
1124 (interactive "fAttach file: \nsDescription: ")
1125 (when (> (length file) 0)
1130 (goto-char (point-min))
1131 (search-forward-regexp "^$")
1132 (insert (concat "Attach: " (replace-regexp-in-string "\\([[:space:]\\]\\)" "\\\\\\1" (file-truename file)) " "
1134 (message (concat "Attached '" file "'."))
1135 (setq post-has-attachment t))))))
1137 (setq mail-yank-prefix "> ")
1141 #+BEGIN_SRC emacs-lisp
1142 (use-package muttrc-mode
1149 ** Reverting buffers
1150 #+BEGIN_SRC emacs-lisp
1151 (use-package autorevert
1152 :diminish auto-revert-mode
1154 (setq global-auto-revert-non-file-buffers t
1155 global-auto-revert-ignore-modes '(pdf-view-mode)
1156 auto-revert-verbose nil)
1157 (global-auto-revert-mode 1))
1160 ** Use-package and load things
1161 #+BEGIN_SRC emacs-lisp
1164 :delight (org-mode "ø")
1165 :mode ("\\.\\(org\\|org_archive\\|txt\\)\\'" . org-mode)
1166 :bind (("C-c l" . org-store-link)
1167 ("C-c a" . org-agenda)
1168 ("C-c b" . org-iswitchb))
1170 ** Agenda Configuration
1171 #+BEGIN_SRC emacs-lisp
1173 (setq-default org-log-done 'time)
1174 (setq-default org-agenda-ndays 5)
1176 ;; agenda configuration
1177 ;; Do not dim blocked tasks
1178 (setq org-agenda-dim-blocked-tasks nil)
1179 (setq org-agenda-inhibit-startup t)
1180 (setq org-agenda-use-tag-inheritance nil)
1182 ;; Compact the block agenda view
1183 (setq org-agenda-compact-blocks t)
1185 ;; Custom agenda command definitions
1186 (setq org-agenda-custom-commands
1187 (quote (("N" "Notes" tags "NOTE"
1188 ((org-agenda-overriding-header "Notes")
1189 (org-tags-match-list-sublevels t)))
1190 ("h" "Habits" tags-todo "STYLE=\"habit\""
1191 ((org-agenda-overriding-header "Habits")
1192 (org-agenda-sorting-strategy
1193 '(todo-state-down effort-up category-keep))))
1197 ((org-agenda-overriding-header "Tasks to Refile")
1198 (org-tags-match-list-sublevels nil)))
1199 (tags-todo "-CANCELLED/!"
1200 ((org-agenda-overriding-header "Stuck Projects")
1201 (org-agenda-skip-function 'bh/skip-non-stuck-projects)
1202 (org-agenda-sorting-strategy
1204 (tags-todo "-HOLD-CANCELLED/!"
1205 ((org-agenda-overriding-header "Projects")
1206 (org-agenda-skip-function 'bh/skip-non-projects)
1207 (org-tags-match-list-sublevels 'indented)
1208 (org-agenda-sorting-strategy
1210 (tags-todo "-CANCELLED/!NEXT"
1211 ((org-agenda-overriding-header (concat "Project Next Tasks"
1212 (if bh/hide-scheduled-and-waiting-next-tasks
1214 " (including WAITING and SCHEDULED tasks)")))
1215 (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
1216 (org-tags-match-list-sublevels t)
1217 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1218 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1219 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1220 (org-agenda-sorting-strategy
1221 '(todo-state-down effort-up category-keep))))
1222 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
1223 ((org-agenda-overriding-header (concat "Project Subtasks"
1224 (if bh/hide-scheduled-and-waiting-next-tasks
1226 " (including WAITING and SCHEDULED tasks)")))
1227 (org-agenda-skip-function 'bh/skip-non-project-tasks)
1228 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1229 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1230 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1231 (org-agenda-sorting-strategy
1233 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
1234 ((org-agenda-overriding-header (concat "Standalone Tasks"
1235 (if bh/hide-scheduled-and-waiting-next-tasks
1237 " (including WAITING and SCHEDULED tasks)")))
1238 (org-agenda-skip-function 'bh/skip-project-tasks)
1239 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1240 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1241 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1242 (org-agenda-sorting-strategy
1244 (tags-todo "-CANCELLED+WAITING|HOLD/!"
1245 ((org-agenda-overriding-header "Waiting and Postponed Tasks")
1246 (org-agenda-skip-function 'bh/skip-stuck-projects)
1247 (org-tags-match-list-sublevels nil)
1248 (org-agenda-todo-ignore-scheduled t)
1249 (org-agenda-todo-ignore-deadlines t)))
1251 ((org-agenda-overriding-header "Tasks to Archive")
1252 (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
1253 (org-tags-match-list-sublevels nil))))
1256 ; org mode agenda files
1257 (setq org-agenda-files
1258 (quote ("~/projects/org-notes/debbugs.org"
1259 "~/projects/org-notes/notes.org"
1260 "~/projects/org-notes/holidays.org"
1261 "~/projects/org-notes/refile.org"
1262 "~/projects/org-notes/diary.org"
1263 "~/projects/org-notes/ool.org"
1264 "~/projects/org-notes/sndservers.org"
1265 "~/projects/org-notes/chaim.org"
1266 "~/projects/org-notes/wildman.org"
1267 "~/projects/org-notes/uddin.org"
1268 "~/projects/org-notes/reviews.org"
1269 "~/org-mode/from-mobile.org"
1270 "~/projects/org-notes/fh.org")))
1272 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
1273 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
1274 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
1275 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
1276 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
1277 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
1278 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
1279 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
1280 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
1281 ; from https://emacs.stackexchange.com/questions/909/how-can-i-have-an-agenda-timeline-view-of-multiple-files
1282 (defun org-agenda-timeline-all (&optional arg)
1285 (dolist (org-agenda-file org-agenda-files)
1286 (insert-file-contents org-agenda-file nil)
1287 (goto-char (point-max))
1289 (write-file "/tmp/timeline.org")
1290 (org-agenda arg "L")))
1291 (define-key org-mode-map (kbd "C-c t") 'org-agenda-timeline-all)
1295 #+BEGIN_SRC emacs-lisp
1296 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
1297 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
1299 (setq org-default-notes-file "~/projects/org-notes/notes.org")
1300 (setq org-id-link-to-org-use-id 'use-existing)
1302 ** Capture Templates
1303 #+BEGIN_SRC emacs-lisp
1304 (setq org-capture-templates ;; mail-specific note template, identified by "m"
1305 `(("m" "Mail" entry (file "~/projects/org-notes/refile.org")
1306 "* %?\n\n Source: %u, [[%:link][%:description]]\n %:initial")
1307 ("t" "todo" entry (file "~/projects/org-notes/refile.org")
1308 "* TODO %?\n :PROPERTIES:\n :END:\n :LOGBOOK:\n :END:\n%U\n%a\n" :clock-in t :clock-resume t)
1309 ("r" "respond" entry (file "~/projects/org-notes/refile.org")
1310 "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
1311 ("n" "note" entry (file "~/projects/org-notes/refile.org")
1312 "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
1313 ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
1314 "* %? :cal:\n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
1315 ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
1316 "* %?\n%U\n" :clock-in t :clock-resume t)
1317 ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
1318 "* TODO Review %c\n%U\n" :immediate-finish t)
1319 ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
1320 "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
1321 ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
1322 "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
1323 ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
1324 "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
1325 ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
1326 "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
1327 ("J" "job" entry (file+olp "~/projects/org-notes/notes.org"
1329 ,(format-time-string "Positions %Y"))
1330 "* TODO Apply for %? :job:\nSCHEDULED: <%<%Y-%m-%d>>\n%U\n%x\n" :clock-in t :clock-resume t)
1331 ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
1332 "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n%a\n")
1336 ;; Remove empty LOGBOOK drawers on clock out
1337 (defun bh/remove-empty-drawer-on-clock-out ()
1340 (beginning-of-line 0)
1341 (org-remove-empty-drawer-at (point))))
1343 (defun my/org-add-id ()
1346 (if (org-current-level)
1355 ** Org mode key bindings
1356 #+BEGIN_SRC emacs-lisp
1357 ;; org mode configuration from http://doc.norang.ca/org-mode.html
1358 ;; Custom Key Bindings
1359 :bind* (("<f9> a" . org-agenda)
1360 ("<f9> I" . bh/punch-in)
1361 ("<f9> O" . bh/punch-out)
1362 ("<f9> SPC" . bh/clock-in-last-task)
1363 ("<f12>" . org-agenda)
1364 ;; ("<f5>" . bh/org-todo)
1365 ("<S-f5>" . bh/widen)
1366 ("<f7>" . bh/set-truncate-lines)
1367 ("<f8>" . org-cycle-agenda-files)
1368 ("<f9> <f9>" . bh/show-org-agenda)
1370 ("<f9> c" . calendar)
1371 ("<f9> f" . boxquote-insert-file)
1372 ("<f9> h" . bh/hide-other)
1373 ("<f9> n" . bh/toggle-next-task-display)
1376 ("<f9> o" . bh/make-org-scratch)
1378 ("<f9> r" . boxquote-region)
1379 ("<f9> s" . bh/switch-to-scratch)
1381 ("<f9> t" . bh/insert-inactive-timestamp)
1382 ("<f9> T" . bh/toggle-insert-inactive-timestamp)
1384 ("<f9> v" . visible-mode)
1385 ("<f9> l" . org-toggle-link-display)
1386 ("<f9> SPC" . bh/clock-in-last-task)
1387 ("C-<f9>" . previous-buffer)
1388 ("M-<f9>" . org-toggle-inline-images)
1389 ("C-x n r" . narrow-to-region)
1390 ("C-<f10>" . next-buffer)
1391 ("<f11>" . org-clock-goto)
1392 ("C-<f11>" . org-clock-in)
1393 ("C-s-<f12>" . bh/save-then-publish)
1394 ("C-c c" . org-capture))
1397 ** Utility Functions
1398 #+BEGIN_SRC emacs-lisp
1399 (defun bh/hide-other ()
1402 (org-back-to-heading 'invisible-ok)
1408 (defun bh/set-truncate-lines ()
1409 "Toggle value of truncate-lines and refresh window display."
1411 (setq truncate-lines (not truncate-lines))
1412 ;; now refresh window display (an idiom from simple.el):
1414 (set-window-start (selected-window)
1415 (window-start (selected-window)))))
1417 (defun bh/make-org-scratch ()
1419 (find-file "/tmp/publish/scratch.org")
1420 (gnus-make-directory "/tmp/publish"))
1422 (defun bh/switch-to-scratch ()
1424 (switch-to-buffer "*scratch*"))
1426 (setq org-use-fast-todo-selection t)
1427 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
1429 ; create function to create headlines in file. This comes from
1430 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
1431 (defun my/org-add-ids-to-headlines-in-file ()
1432 "Add ID properties to all headlines in the current file which
1433 do not already have one."
1435 (org-map-entries 'org-id-get-create))
1436 (defun dla/org-update-ids-to-headlines-in-file ()
1437 "Add or replace ID properties to all headlines in the current file
1438 (or narrowed region)."
1440 (org-map-entries '(lambda () (org-id-get-create t))))
1441 ; if we wanted to do this to every buffer, do the following:
1442 ; (add-hook 'org-mode-hook
1444 ; (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
1447 #+BEGIN_SRC emacs-lisp
1448 (setq org-todo-keywords
1449 (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
1450 (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
1452 (setq org-todo-keyword-faces
1453 (quote (("TODO" :foreground "red" :weight bold)
1454 ("NEXT" :foreground "blue" :weight bold)
1455 ("DONE" :foreground "forest green" :weight bold)
1456 ("WAITING" :foreground "orange" :weight bold)
1457 ("HOLD" :foreground "magenta" :weight bold)
1458 ("CANCELLED" :foreground "forest green" :weight bold)
1459 ("MEETING" :foreground "forest green" :weight bold)
1460 ("PHONE" :foreground "forest green" :weight bold))))
1462 (setq org-todo-state-tags-triggers
1463 (quote (("CANCELLED" ("CANCELLED" . t))
1464 ("WAITING" ("WAITING" . t))
1465 ("HOLD" ("WAITING") ("HOLD" . t))
1466 (done ("WAITING") ("HOLD"))
1467 ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
1468 ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
1469 ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
1473 ; (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
1474 ; add ids on creation of nodes
1475 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
1478 ; resolve clocks after 10 minutes of idle; use xprintidle
1479 ; (setq org-clock-idle-time 10)
1480 ; (setq org-clock-x11idle-program-name "xprintidle")
1482 ; this is from http://doc.norang.ca/org-mode.html#Capture
1483 ; use C-M-r for org mode capture
1484 (global-set-key (kbd "C-M-r") 'org-capture)
1486 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
1487 (setq org-refile-targets (quote ((nil :maxlevel . 9)
1488 (org-agenda-files :maxlevel . 9))))
1490 ; Use full outline paths for refile targets - we file directly with IDO
1491 (setq org-refile-use-outline-path t)
1493 ; Targets complete directly with IDO
1494 (setq org-outline-path-complete-in-steps nil)
1496 ; Allow refile to create parent tasks with confirmation
1497 (setq org-refile-allow-creating-parent-nodes (quote confirm))
1499 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
1500 ; (setq org-completion-use-ido t)
1501 ; (setq ido-everywhere t)
1502 ; (setq ido-max-directory-size 100000)
1503 ; (ido-mode (quote both))
1504 ; ; Use the current window when visiting files and buffers with ido
1505 ; (setq ido-default-file-method 'selected-window)
1506 ; (setq ido-default-buffer-method 'selected-window)
1507 ; ; Use the current window for indirect buffer display
1508 ; (setq org-indirect-buffer-display 'current-window)
1511 ;;;; Refile settings
1512 ; Exclude DONE state tasks from refile targets
1513 (defun bh/verify-refile-target ()
1514 "Exclude todo keywords with a done state from refile targets"
1515 (not (member (nth 2 (org-heading-components)) org-done-keywords)))
1517 (setq org-refile-target-verify-function 'bh/verify-refile-target)
1519 ;; ensure that emacsclient will show just the note to be edited when invoked
1520 ;; from Mutt, and that it will shut down emacsclient once finished;
1521 ;; fallback to legacy behavior when not invoked via org-protocol.
1522 (require 'org-protocol)
1523 ; (add-hook 'org-capture-mode-hook 'delete-other-windows)
1524 (setq my-org-protocol-flag nil)
1525 (defadvice org-capture-finalize (after delete-frame-at-end activate)
1526 "Delete frame at remember finalization"
1527 (progn (if my-org-protocol-flag (delete-frame))
1528 (setq my-org-protocol-flag nil)))
1529 (defadvice org-capture-refile (around delete-frame-after-refile activate)
1530 "Delete frame at remember refile"
1531 (if my-org-protocol-flag
1533 (setq my-org-protocol-flag nil)
1538 (defadvice org-capture-kill (after delete-frame-at-end activate)
1539 "Delete frame at remember abort"
1540 (progn (if my-org-protocol-flag (delete-frame))
1541 (setq my-org-protocol-flag nil)))
1542 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
1543 (setq my-org-protocol-flag t))
1545 (defadvice org-insert-todo-heading (after dla/create-id activate)
1550 (add-to-list 'org-modules 'org-habit)
1552 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
1553 (defun open-mail-in-mutt (message)
1554 "Open a mail message in Mutt, using an external terminal.
1556 Message can be specified either by a path pointing inside a
1557 Maildir, or by Message-ID."
1558 (interactive "MPath or Message-ID: ")
1560 (format "faf xterm -e \"%s %s\""
1561 (substitute-in-file-name "$HOME/bin/mutt_open") message)))
1563 ;; add support for "mutt:ID" links
1564 (org-add-link-type "mutt" 'open-mail-in-mutt)
1566 (defun my-org-mode-setup ()
1567 ; (load-library "reftex")
1568 (and (buffer-file-name)
1569 (file-exists-p (buffer-file-name))
1571 ; (reftex-parse-all)
1572 (reftex-set-cite-format
1573 '((?b . "[[bib:%l][%l-bib]]")
1574 (?n . "[[notes:%l][%l-notes]]")
1576 (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
1578 (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
1579 (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
1580 (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
1581 (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
1583 (add-hook 'org-mode-hook 'my-org-mode-setup)
1585 (defun org-mode-reftex-search ()
1587 (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
1589 (defun open-research-paper (bibtexkey)
1590 "Open a paper by bibtex key"
1591 (interactive "bibtex key: ")
1594 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
1595 (org-add-link-type "papers" 'open-research-paper)
1596 (defun open-research-paper-pdf (bibtexkey)
1597 "Open a paper pdf by bibtex key"
1598 (interactive "bibtex key: ")
1600 (format "%s -p evince_annot %s"
1601 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
1602 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
1604 (add-to-list 'org-link-abbrev-alist
1606 "~/projects/research/paper_notes.org::#%s"))
1608 ; I pretty much always want hiearchical checkboxes
1609 (setq org-hierachical-checkbox-statistics nil)
1611 ;; Add \begin{equation}\end{equation} templates to the org mode easy templates
1612 (add-to-list 'org-structure-template-alist
1613 '("E" "\\begin{equation}\n?\n\\end{equation}"))
1616 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
1617 (defun my-rtcite-export-handler (path desc format)
1618 (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
1619 (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
1620 (match-string 1 path)))
1621 (path (substring path 0 (match-beginning 0))))
1622 (cond ((eq format 'latex)
1624 (equal 0 (search "rtcite:" desc)))
1625 (format "\\cite{%s}" search)
1626 (format "\\cite[%s]{%s}" desc search))))))
1628 (org-add-link-type "rtcite"
1630 'my-rtcite-export-handler)
1634 ** Org Mobile Configuration
1635 #+BEGIN_SRC emacs-lisp
1636 (setq-default org-mobile-directory "/linnode.donarmstrong.com:/sites/dav.donarmstrong.com/root/org/")
1637 (when (string= system-name "linnode")
1638 (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
1639 (setq-default org-directory "/home/don/org-mode/")
1640 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
1644 #+BEGIN_SRC emacs-lisp
1645 ;; org mode ical export
1646 (setq org-icalendar-timezone "America/Los_Angeles")
1647 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
1648 ;; we already add the id manually
1649 (setq org-icalendar-store-UID t)
1652 ** General Org Babel Configuration
1653 #+BEGIN_SRC emacs-lisp
1654 ;; org babel support
1655 (org-babel-do-load-languages
1656 'org-babel-load-languages
1663 ;; use graphviz-dot for dot things
1664 (add-to-list 'org-src-lang-modes '("dot" . graphviz-dot))
1665 ;; org-babel-by-backend
1666 (defmacro org-babel-by-backend (&rest body)
1667 `(case (if (boundp 'backend)
1668 (org-export-backend-name backend)
1671 (defun my/fix-inline-images ()
1672 (when org-inline-image-overlays
1673 (org-redisplay-inline-images)))
1675 (add-hook 'org-babel-after-execute-hook
1676 'my/fix-inline-images)
1679 ** LaTeX configuration
1681 :ID: 7135ba17-6a50-4eed-84ca-b90afa5b12f8
1683 #+BEGIN_SRC emacs-lisp
1685 (add-to-list 'org-latex-classes
1687 "\\documentclass[11pt,oneside,article]{memoir}\n"
1688 ("\\section{%s}" . "\\section*{%s}")
1689 ("\\subsection{%s}" . "\\subsection*{%s}")
1690 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1691 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1692 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1694 (setq org-beamer-outline-frame-options "")
1695 (add-to-list 'org-latex-classes
1697 "\\documentclass[ignorenonframetext]{beamer}
1698 [NO-DEFAULT-PACKAGES]
1701 ("\\section{%s}" . "\\section*{%s}")
1702 ("\\subsection{%s}" . "\\subsection*{%s}")
1703 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1704 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1705 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1707 (add-to-list 'org-latex-classes
1709 "\\documentclass[11pt,oneside]{memoir}\n"
1710 ("\\chapter{%s}" . "\\chapter*{%s}")
1711 ("\\section{%s}" . "\\section*{%s}")
1712 ("\\subsection{%s}" . "\\subsection*{%s}")
1713 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
1715 (add-to-list 'org-latex-classes
1717 "\\documentclass[11pt]{letter}
1718 [NO-DEFAULT-PACKAGES]
1721 ("\\section{%s}" . "\\section*{%s}")
1722 ("\\subsection{%s}" . "\\subsection*{%s}")
1723 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1724 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1725 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1727 (add-to-list 'org-latex-classes
1729 "\\documentclass{dlacv}
1730 [NO-DEFAULT-PACKAGES]
1733 ("\\section{%s}" . "\\section*{%s}")
1734 ("\\subsection{%s}" . "\\subsection*{%s}")
1735 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1736 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1737 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1740 (add-to-list 'org-latex-classes
1742 "\\documentclass{dlaresume}
1743 [NO-DEFAULT-PACKAGES]
1746 ("\\section{%s}" . "\\section*{%s}")
1747 ("\\subsection{%s}" . "\\subsection*{%s}")
1748 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1749 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1750 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1753 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
1754 ;; but adapted to use latexmk 4.22 or higher.
1755 (setq org-latex-pdf-process '("latexmk -f -pdflatex=xelatex -bibtex -use-make -pdf %f"))
1757 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
1758 (setq org-latex-default-packages-alist
1760 ("" "unicode-math" t)
1762 (setq org-latex-packages-alist
1769 ("" "longtable" nil)
1772 ;; make equations larger
1773 (setq org-format-latex-options (plist-put org-format-latex-options :scale 2.0))
1775 (defun org-create-formula--latex-header ()
1776 "Return LaTeX header appropriate for previewing a LaTeX snippet."
1777 (let ((info (org-combine-plists (org-export--get-global-options
1778 (org-export-get-backend 'latex))
1779 (org-export--get-inbuffer-options
1780 (org-export-get-backend 'latex)))))
1781 (org-latex-guess-babel-language
1782 (org-latex-guess-inputenc
1783 (org-splice-latex-header
1784 org-format-latex-header
1785 org-latex-default-packages-alist
1787 (plist-get info :latex-header)))
1791 ; support ignoring headers in org mode export to latex
1792 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
1793 (defadvice org-latex-headline (around my-latex-skip-headlines
1794 (headline contents info) activate)
1795 (if (member "ignoreheading" (org-element-property :tags headline))
1796 (setq ad-return-value contents)
1799 ;; keep latex logfiles
1801 (setq org-latex-remove-logfiles nil)
1803 ;; Resume clocking task when emacs is restarted
1804 (org-clock-persistence-insinuate)
1806 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
1807 (setq org-clock-history-length 23)
1808 ;; Resume clocking task on clock-in if the clock is open
1809 (setq org-clock-in-resume t)
1810 ;; Change tasks to NEXT when clocking in; this avoids clocking in when
1811 ;; there are things like PHONE calls
1812 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
1813 ;; Separate drawers for clocking and logs
1814 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
1815 ;; Save clock data and state changes and notes in the LOGBOOK drawer
1816 (setq org-clock-into-drawer t)
1817 (setq org-log-into-drawer t)
1818 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
1819 (setq org-clock-out-remove-zero-time-clocks t)
1820 ;; Clock out when moving task to a done state
1821 (setq org-clock-out-when-done t)
1822 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
1823 (setq org-clock-persist t)
1824 ;; Do not prompt to resume an active clock
1825 (setq org-clock-persist-query-resume nil)
1826 ;; Enable auto clock resolution for finding open clocks
1827 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
1828 ;; Include current clocking task in clock reports
1829 (setq org-clock-report-include-clocking-task t)
1831 ;; the cache seems to be broken
1832 (setq org-element-use-cache nil)
1834 (defvar bh/keep-clock-running nil)
1836 (defun bh/is-task-p ()
1837 "Any task with a todo keyword and no subtask"
1841 (subtree-end (save-excursion (org-end-of-subtree t)))
1842 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1845 (while (and (not has-subtask)
1846 (< (point) subtree-end)
1847 (re-search-forward "^\*+ " subtree-end t))
1848 (when (member (org-get-todo-state) org-todo-keywords-1)
1849 (setq has-subtask t))))
1850 (and is-a-task (not has-subtask)))))
1851 (defun bh/is-project-p ()
1852 "Any task with a todo keyword subtask"
1856 (subtree-end (save-excursion (org-end-of-subtree t)))
1857 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1860 (while (and (not has-subtask)
1861 (< (point) subtree-end)
1862 (re-search-forward "^\*+ " subtree-end t))
1863 (when (member (org-get-todo-state) org-todo-keywords-1)
1864 (setq has-subtask t))))
1865 (and is-a-task has-subtask))))
1867 (defun bh/is-subproject-p ()
1868 "Any task which is a subtask of another project"
1869 (let ((is-subproject)
1870 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1872 (while (and (not is-subproject) (org-up-heading-safe))
1873 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
1874 (setq is-subproject t))))
1875 (and is-a-task is-subproject)))
1878 (defun bh/clock-in-to-next (kw)
1879 "Switch a task from TODO to NEXT when clocking in.
1880 Skips capture tasks, projects, and subprojects.
1881 Switch projects and subprojects from NEXT back to TODO"
1882 (when (not (and (boundp 'org-capture-mode) org-capture-mode))
1884 ((and (member (org-get-todo-state) (list "TODO"))
1887 ((and (member (org-get-todo-state) (list "NEXT"))
1891 (defun bh/punch-in (arg)
1892 "Start continuous clocking and set the default task to the
1893 selected task. If no task is selected set the Organization task
1894 as the default task."
1896 (setq bh/keep-clock-running t)
1897 (if (equal major-mode 'org-agenda-mode)
1899 ;; We're in the agenda
1901 (let* ((marker (org-get-at-bol 'org-hd-marker))
1902 (tags (org-with-point-at marker (org-get-tags-at))))
1903 (if (and (eq arg 4) tags)
1904 (org-agenda-clock-in '(16))
1905 (bh/clock-in-organization-task-as-default)))
1907 ;; We are not in the agenda
1911 ; Find the tags on the current task
1912 (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
1913 (org-clock-in '(16))
1914 (bh/clock-in-organization-task-as-default)))))
1916 (defun bh/punch-out ()
1918 (setq bh/keep-clock-running nil)
1919 (when (org-clock-is-active)
1921 (org-agenda-remove-restriction-lock))
1923 (defun bh/clock-in-default-task ()
1925 (org-with-point-at org-clock-default-task
1928 (defun bh/clock-in-parent-task ()
1929 "Move point to the parent (project) task if any and clock in"
1930 (let ((parent-task))
1934 (while (and (not parent-task) (org-up-heading-safe))
1935 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
1936 (setq parent-task (point))))
1938 (org-with-point-at parent-task
1940 (when bh/keep-clock-running
1941 (bh/clock-in-default-task)))))))
1943 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
1945 (defun bh/clock-in-organization-task-as-default ()
1947 (org-with-point-at (org-id-find bh/organization-task-id 'marker)
1948 (org-clock-in '(16))))
1950 (defun bh/clock-out-maybe ()
1951 (when (and bh/keep-clock-running
1952 (not org-clock-clocking-in)
1953 (marker-buffer org-clock-default-task)
1954 (not org-clock-resolving-clocks-due-to-idleness))
1955 (bh/clock-in-parent-task)))
1957 ; (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
1960 (defun bh/clock-in-task-by-id (id)
1961 "Clock in a task by id"
1962 (org-with-point-at (org-id-find id 'marker)
1963 (org-clock-in nil)))
1965 (defun bh/clock-in-last-task (arg)
1966 "Clock in the interrupted task if there is one
1967 Skip the default task and get the next one.
1968 A prefix arg forces clock in of the default task."
1970 (let ((clock-in-to-task
1972 ((eq arg 4) org-clock-default-task)
1973 ((and (org-clock-is-active)
1974 (equal org-clock-default-task (cadr org-clock-history)))
1975 (caddr org-clock-history))
1976 ((org-clock-is-active) (cadr org-clock-history))
1977 ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
1978 (t (car org-clock-history)))))
1980 (org-with-point-at clock-in-to-task
1981 (org-clock-in nil))))
1984 (defun org-export-to-ods ()
1986 (let ((csv-file "data.csv"))
1987 (org-table-export csv-file "orgtbl-to-csv")
1988 (org-odt-convert csv-file "ods" 'open)))
1990 ; allow for zero-width-space to be a break in regexp too
1991 ; (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
1992 ; (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
1993 ; (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
1995 ;; support inserting screen shots
1996 (defun my/org-insert-screenshot ()
1997 "Take a screenshot into a time stamped unique-named file in the
1998 same directory as the org-buffer and insert a link to this file."
2000 (defvar my/org-insert-screenshot/filename)
2001 (setq my/org-insert-screenshot/filename
2003 "Screenshot to insert: "
2005 (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
2008 (call-process "import" nil nil nil my/org-insert-screenshot/filename)
2009 (insert (concat "[[" my/org-insert-screenshot/filename "]]"))
2010 (org-display-inline-images))
2012 (defun my/fix-inline-images ()
2013 (when org-inline-image-overlays
2014 (org-redisplay-inline-images)))
2016 (add-hook 'org-babel-after-execute-hook 'my/fix-inline-images)
2018 ;; use xelatex to preview with imagemagick
2019 (add-to-list 'org-preview-latex-process-alist
2020 '(xelateximagemagick
2021 :programs ("xelatex" "convert")
2022 :description "pdf > png"
2023 :message "you need to install xelatex and imagemagick"
2025 :image-input-type "pdf"
2026 :image-output-type "png"
2027 :image-size-adjust (1.0 . 1.0)
2028 :latex-compiler ("xelatex -interaction nonstopmode -output-directory %o %f")
2029 :image-converter ("convert -density %D -trim -antialias %f -quality 100 %O"))
2031 ;; use xelatex by default
2032 (setq org-preview-latex-default-process 'xelateximagemagick)
2034 ; from http://orgmode.org/Changes.html
2035 (defun my/org-repair-property-drawers ()
2036 "Fix properties drawers in current buffer.
2037 Ignore non Org buffers."
2039 (when (eq major-mode 'org-mode)
2040 (org-with-wide-buffer
2041 (goto-char (point-min))
2042 (let ((case-fold-search t)
2043 (inline-re (and (featurep 'org-inlinetask)
2044 (concat (org-inlinetask-outline-regexp)
2048 (unless (and inline-re (org-looking-at-p inline-re))
2050 (let ((end (save-excursion (outline-next-heading) (point))))
2052 (when (org-looking-at-p org-planning-line-re) (forward-line))
2053 (when (and (< (point) end)
2054 (not (org-looking-at-p org-property-drawer-re))
2056 (and (re-search-forward org-property-drawer-re end t)
2057 (eq (org-element-type
2058 (save-match-data (org-element-at-point)))
2060 (insert (delete-and-extract-region
2062 (min (1+ (match-end 0)) end)))
2063 (unless (bolp) (insert "\n"))))))))))))
2067 #+BEGIN_SRC emacs-lisp
2071 (use-package calfw-org
2074 (use-package org-gcal
2076 :config '((if (file-readable-p "~/.hide/org_gcal.el")
2077 (load-file "~/.hide/org_gcal.el"))
2082 #+BEGIN_SRC emacs-lisp
2086 ;; Show notification 10 minutes before event
2087 (setq appt-message-warning-time 10)
2088 ;; Disable multiple reminders
2089 (setq appt-display-interval appt-message-warning-time)
2090 (setq appt-display-mode-line nil)
2092 ;; add automatic reminders for appointments
2093 (defun my/org-agenda-to-appt ()
2095 (setq appt-time-msg-list nil)
2096 (org-agenda-to-appt))
2097 ;; add reminders when starting emacs
2098 (my/org-agenda-to-appt)
2099 ;; when rebuilding the agenda
2100 (defadvice org-agenda-redo (after org-agenda-redo-add-appts)
2101 "Pressing `r' on the agenda will also add appointments."
2102 (my/org-agenda-to-appt)
2104 ;; when saving all org buffers
2105 (defadvice org-save-all-org-buffers (after org-save-all-org-buffers-add-appts)
2106 "Re-add appts after saving all org buffers"
2107 (my/org-agenda-to-appt))
2108 ;; Display appointments as a window manager notification
2109 (setq appt-disp-window-function 'my/appt-display)
2110 (setq appt-delete-window-function (lambda () t))
2112 (setq my/appt-notification-app (concat (getenv "HOME") "/bin/appt_notification"))
2114 (defun my/appt-display (min-to-app new-time msg)
2115 (if (atom min-to-app)
2116 (start-process "my/appt-notification-app" nil my/appt-notification-app min-to-app msg)
2117 (dolist (i (number-sequence 0 (1- (length min-to-app))))
2118 (start-process "my/appt-notification-app" nil my/appt-notification-app
2119 (nth i min-to-app) (nth i msg))))
2126 #+BEGIN_SRC emacs-lisp
2131 #+BEGIN_SRC emacs-lisp
2132 (global-unset-key "\M-g")
2133 (global-set-key (kbd "M-g l") 'goto-line)
2137 #+BEGIN_SRC emacs-lisp
2138 (use-package debian-changelog
2140 :mode "debian/changelog"
2142 (setq debian-changelog-mailing-address "don@debian.org")
2143 (setq debian-changelog-full-name "Don Armstrong"))
2145 * Misc (uncharacterized)
2146 #+BEGIN_SRC emacs-lisp
2147 (setq calendar-latitude 38.6)
2148 (setq calendar-longitude -121.5)
2149 (setq case-fold-search t)
2150 (setq confirm-kill-emacs (quote y-or-n-p))
2151 (setq cperl-lazy-help-time nil)
2153 (setq display-time-24hr-format t)
2154 (setq display-time-day-and-date t)
2155 (display-time-mode 1)
2156 (global-font-lock-mode 1)
2158 (setq log-edit-keep-buffer t)
2159 (setq mail-user-agent (quote sendmail-user-agent))
2160 (setq markdown-enable-math t)
2161 (setq markdown-follow-wiki-link-on-enter nil)
2162 (setq mutt-alias-file-list (quote ("~/.mutt/aliases" "~/.mail_aliases")))
2163 (setq ps-footer-font-size (quote (8 . 10)))
2164 (setq ps-header-font-size (quote (8 . 10)))
2165 (setq ps-header-title-font-size (quote (10 . 10)))
2166 (setq ps-line-number-color "blue")
2167 (setq ps-print-footer t)
2168 (setq ps-print-footer-frame nil)
2169 (setq ps-print-only-one-header t)
2170 (setq sentence-end "[.?!][]\"')]*\\($\\| \\| \\)[
2172 (setq sentence-end-double-space nil)
2173 ; enable matching parenthesis
2176 (setq user-mail-address "don@donarmstrong.com")
2177 (setq vc-delete-logbuf-window nil)
2178 (setq vc-follow-symlinks t)
2180 ;; use git before SVN; use CVS earlier, because I have CVS
2181 ;; repositories inside of git directories
2182 (setq vc-handled-backends (quote (CVS Git RCS SVN SCCS Bzr Hg Mtn Arch)))
2184 ;; switch back to the old primary selection method
2185 (setq x-select-enable-clipboard nil)
2186 (setq x-select-enable-primary t)
2187 ; (setq mouse-drag-copy-region t)
2189 (fset 'perl-mode 'cperl-mode)
2190 ;;(load-file "cperl-mode.el")
2192 ;; tramp configuration
2193 (setq tramp-use-ssh-controlmaster-options nil)
2195 (setq-default c-indent-level 4)
2196 (setq-default c-brace-imaginary-offset 0)
2197 (setq-default c-brace-offset -4)
2198 (setq-default c-argdecl-indent 4)
2199 (setq-default c-label-offset -4)
2200 (setq-default c-continued-statement-offset 4)
2202 (setq-default indent-tabs-mode nil)
2203 (setq-default tab-width 4)
2206 ;; (autoload 'php-mode "php-mode" "PHP editing mode" t)
2207 ;; (add-to-list 'auto-mode-alist '("\\.php3?\\'" . php-mode))
2208 ;; (add-to-list 'auto-mode-alist '("\\.phtml?\\'" . php-mode))
2209 ;; (add-to-list 'auto-mode-alist '("\\.php?\\'" . php-mode))
2210 ;; (add-to-list 'auto-mode-alist '("\\.php4?\\'" . php-mode))
2213 (defun insert-date ()
2214 "Insert date at point."
2216 (insert (format-time-string "%A, %B %e, %Y %k:%M:%S %Z")))
2217 (global-set-key "\C-[d" 'insert-date)
2219 (defun unfill-paragraph (arg)
2220 "Pull this whole paragraph up onto one line."
2222 (let ((fill-column 10000))
2223 (fill-paragraph arg))
2226 (column-number-mode t)
2229 ** Desktop-save-mode
2230 If the envvar EMACS_SERVER_NAME is set, consider this a separate
2231 emacs, and use a different desktop file to restore history
2232 #+BEGIN_SRC emacs-lisp
2236 (setq desktop-base-file-name
2237 (convert-standard-filename
2239 (or (getenv "EMACS_SERVER_NAME")
2243 (setq desktop-base-lock-name
2244 (convert-standard-filename
2245 (concat desktop-base-file-name
2247 (setq desktop-auto-save-timeout 60)
2248 (setq desktop-restore-eager 5)
2249 (setq desktop-lazy-verbose nil)
2250 (desktop-save-mode 1)
2254 ** Misc (Uncharacterized)
2255 #+BEGIN_SRC emacs-lisp
2256 '(icomplete-mode on)
2258 ;; custom-set-faces was added by Custom.
2259 ;; If you edit it by hand, you could mess it up, so be careful.
2260 ;; Your init file should contain only one such instance.
2261 ;; If there is more than one, they won't work right.
2262 '(menu ((((type x-toolkit)) (:background "black" :foreground "grey90")))))
2265 (put 'upcase-region 'disabled nil)
2266 (put 'downcase-region 'disabled nil)
2267 (put 'narrow-to-region 'disabled nil)
2269 ; (defun turn-on-flyspell ()
2270 ; "Force flyspell-mode on using a positive arg. For use in hooks."
2272 ; (flyspell-mode 1))
2275 ; Outline-minor-mode key map
2276 (define-prefix-command 'cm-map nil "Outline-")
2278 (define-key cm-map "q" 'outline-hide-sublevels) ; Hide everything but the top-level headings
2279 (define-key cm-map "t" 'outline-hide-body) ; Hide everything but headings (all body lines)
2280 (define-key cm-map "o" 'outline-hide-other) ; Hide other branches
2281 (define-key cm-map "c" 'outline-hide-entry) ; Hide this entry's body
2282 (define-key cm-map "l" 'outline-hide-leaves) ; Hide body lines in this entry and sub-entries
2283 (define-key cm-map "d" 'outline-hide-subtree) ; Hide everything in this entry and sub-entries
2285 (define-key cm-map "a" 'outline-show-all) ; Show (expand) everything
2286 (define-key cm-map "e" 'outline-show-entry) ; Show this heading's body
2287 (define-key cm-map "i" 'outline-show-children) ; Show this heading's immediate child sub-headings
2288 (define-key cm-map "k" 'outline-show-branches) ; Show all sub-headings under this heading
2289 (define-key cm-map "s" 'outline-show-subtree) ; Show (expand) everything in this heading & below
2291 (define-key cm-map "u" 'outline-up-heading) ; Up
2292 (define-key cm-map "n" 'outline-next-visible-heading) ; Next
2293 (define-key cm-map "p" 'outline-previous-visible-heading) ; Previous
2294 (define-key cm-map "f" 'outline-forward-same-level) ; Forward - same level
2295 (define-key cm-map "b" 'outline-backward-same-level) ; Backward - same level
2296 (global-set-key "\M-o" cm-map)
2297 ; fix up tmux xterm keys
2298 ; stolen from http://unix.stackexchange.com/questions/24414/shift-arrow-not-working-in-emacs-within-tmux
2299 (defun fix-up-tmux-keys ()
2300 "Fix up tmux xterm keys"
2303 (let ((x 2) (tkey ""))
2323 ;; ctrl + alt + shift
2325 (setq tkey "C-M-S-"))
2328 (define-key key-translation-map (kbd (format "M-[ 1 ; %d A" x)) (kbd (format "%s<up>" tkey)))
2329 (define-key key-translation-map (kbd (format "M-[ 1 ; %d B" x)) (kbd (format "%s<down>" tkey)))
2330 (define-key key-translation-map (kbd (format "M-[ 1 ; %d C" x)) (kbd (format "%s<right>" tkey)))
2331 (define-key key-translation-map (kbd (format "M-[ 1 ; %d D" x)) (kbd (format "%s<left>" tkey)))
2333 (define-key key-translation-map (kbd (format "M-[ 1 ; %d H" x)) (kbd (format "%s<home>" tkey)))
2335 (define-key key-translation-map (kbd (format "M-[ 1 ; %d F" x)) (kbd (format "%s<end>" tkey)))
2337 (define-key key-translation-map (kbd (format "M-[ 5 ; %d ~" x)) (kbd (format "%s<prior>" tkey)))
2339 (define-key key-translation-map (kbd (format "M-[ 6 ; %d ~" x)) (kbd (format "%s<next>" tkey)))
2341 (define-key key-translation-map (kbd (format "M-[ 2 ; %d ~" x)) (kbd (format "%s<delete>" tkey)))
2343 (define-key key-translation-map (kbd (format "M-[ 3 ; %d ~" x)) (kbd (format "%s<delete>" tkey)))
2345 (define-key key-translation-map (kbd (format "M-[ 1 ; %d P" x)) (kbd (format "%s<f1>" tkey)))
2347 (define-key key-translation-map (kbd (format "M-[ 1 ; %d Q" x)) (kbd (format "%s<f2>" tkey)))
2349 (define-key key-translation-map (kbd (format "M-[ 1 ; %d R" x)) (kbd (format "%s<f3>" tkey)))
2351 (define-key key-translation-map (kbd (format "M-[ 1 ; %d S" x)) (kbd (format "%s<f4>" tkey)))
2353 (define-key key-translation-map (kbd (format "M-[ 15 ; %d ~" x)) (kbd (format "%s<f5>" tkey)))
2355 (define-key key-translation-map (kbd (format "M-[ 17 ; %d ~" x)) (kbd (format "%s<f6>" tkey)))
2357 (define-key key-translation-map (kbd (format "M-[ 18 ; %d ~" x)) (kbd (format "%s<f7>" tkey)))
2359 (define-key key-translation-map (kbd (format "M-[ 19 ; %d ~" x)) (kbd (format "%s<f8>" tkey)))
2361 (define-key key-translation-map (kbd (format "M-[ 20 ; %d ~" x)) (kbd (format "%s<f9>" tkey)))
2363 (define-key key-translation-map (kbd (format "M-[ 21 ; %d ~" x)) (kbd (format "%s<f10>" tkey)))
2365 (define-key key-translation-map (kbd (format "M-[ 23 ; %d ~" x)) (kbd (format "%s<f11>" tkey)))
2367 (define-key key-translation-map (kbd (format "M-[ 24 ; %d ~" x)) (kbd (format "%s<f12>" tkey)))
2369 (define-key key-translation-map (kbd (format "M-[ 25 ; %d ~" x)) (kbd (format "%s<f13>" tkey)))
2371 (define-key key-translation-map (kbd (format "M-[ 26 ; %d ~" x)) (kbd (format "%s<f14>" tkey)))
2373 (define-key key-translation-map (kbd (format "M-[ 28 ; %d ~" x)) (kbd (format "%s<f15>" tkey)))
2375 (define-key key-translation-map (kbd (format "M-[ 29 ; %d ~" x)) (kbd (format "%s<f16>" tkey)))
2377 (define-key key-translation-map (kbd (format "M-[ 31 ; %d ~" x)) (kbd (format "%s<f17>" tkey)))
2379 (define-key key-translation-map (kbd (format "M-[ 32 ; %d ~" x)) (kbd (format "%s<f18>" tkey)))
2381 (define-key key-translation-map (kbd (format "M-[ 33 ; %d ~" x)) (kbd (format "%s<f19>" tkey)))
2383 (define-key key-translation-map (kbd (format "M-[ 34 ; %d ~" x)) (kbd (format "%s<f20>" tkey)))
2390 ; (add-hook 'tty-setup-hook 'fix-up-tmux-keys)
2392 (defadvice ask-user-about-supersession-threat (around ask-user-about-supersession-threat-if-necessary)
2393 "Call ask-user-about-supersession-threat only if the buffer is actually obsolete."
2394 (if (or (buffer-modified-p)
2395 (verify-visited-file-modtime)
2396 (< (* 8 1024 1024) (buffer-size))
2397 (/= 0 (call-process-region 1 (+ 1 (buffer-size)) "diff" nil nil nil "-q" (buffer-file-name) "-")))
2399 (clear-visited-file-modtime)
2401 (ad-activate 'ask-user-about-supersession-threat)
2405 #+BEGIN_SRC emacs-lisp
2409 (or (getenv "EMACS_SERVER_NAME")
2411 (unless (server-running-p)
2412 (global-set-key "\C-xp" 'server-edit)
2419 #+BEGIN_SRC emacs-lisp
2420 (provide 'don-configuration)