src/Makefile.in

   1 # Makefile.in generated by automake 1.13.1 from Makefile.am.
   2 # @configure_input@
   3
   4 # Copyright (C) 1994-2012 Free Software Foundation, Inc.
   5
   6 # This Makefile.in is free software; the Free Software Foundation
   7 # gives unlimited permission to copy and/or distribute it,
   8 # with or without modifications, as long as this notice is preserved.
   9
  10 # This program is distributed in the hope that it will be useful,
  11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
  12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
  13 # PARTICULAR PURPOSE.
  14
  15 @SET_MAKE@
  16
  17 VPATH = @srcdir@
  18 am__make_dryrun = \
  19   { \
  20     am__dry=no; \
  21     case $$MAKEFLAGS in \
  22       *\\[\ \   ]*) \
  23         echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
  24           | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
  25       *) \
  26         for am__flg in $$MAKEFLAGS; do \
  27           case $$am__flg in \
  28             *=*|--*) ;; \
  29             *n*) am__dry=yes; break;; \
  30           esac; \
  31         done;; \
  32     esac; \
  33     test $$am__dry = yes; \
  34   }
  35 pkgdatadir = $(datadir)/@PACKAGE@
  36 pkgincludedir = $(includedir)/@PACKAGE@
  37 pkglibdir = $(libdir)/@PACKAGE@
  38 pkglibexecdir = $(libexecdir)/@PACKAGE@
  39 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
  40 install_sh_DATA = $(install_sh) -c -m 644
  41 install_sh_PROGRAM = $(install_sh) -c
  42 install_sh_SCRIPT = $(install_sh) -c
  43 INSTALL_HEADER = $(INSTALL_DATA)
  44 transform = $(program_transform_name)
  45 NORMAL_INSTALL = :
  46 PRE_INSTALL = :
  47 POST_INSTALL = :
  48 NORMAL_UNINSTALL = :
  49 PRE_UNINSTALL = :
  50 POST_UNINSTALL = :
  51 build_triplet = @build@
  52 host_triplet = @host@
  53 bin_PROGRAMS = fastq-grep$(EXEEXT) fastq-kmers$(EXEEXT) \
  54         fastq-match$(EXEEXT) fastq-uniq$(EXEEXT) fastq-qual$(EXEEXT) \
  55         fastq-sample$(EXEEXT) fastq-qualadj$(EXEEXT) \
  56         fastq-sort$(EXEEXT) fastq-qscale$(EXEEXT)
  57 subdir = src
  58 DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
  59         $(srcdir)/version.h.in $(top_srcdir)/depcomp
  60 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
  61 am__aclocal_m4_deps = $(top_srcdir)/m4/libtool.m4 \
  62         $(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
  63         $(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
  64         $(top_srcdir)/configure.ac
  65 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
  66         $(ACLOCAL_M4)
  67 mkinstalldirs = $(install_sh) -d
  68 CONFIG_CLEAN_FILES = version.h
  69 CONFIG_CLEAN_VPATH_FILES =
  70 am__installdirs = "$(DESTDIR)$(bindir)"
  71 PROGRAMS = $(bin_PROGRAMS)
  72 am__objects_1 = common.$(OBJEXT)
  73 am__objects_2 = parse.$(OBJEXT)
  74 am_fastq_grep_OBJECTS = fastq-grep.$(OBJEXT) $(am__objects_1) \
  75         $(am__objects_2)
  76 fastq_grep_OBJECTS = $(am_fastq_grep_OBJECTS)
  77 am__DEPENDENCIES_1 =
  78 fastq_grep_DEPENDENCIES = $(am__DEPENDENCIES_1)
  79 AM_V_lt = $(am__v_lt_@AM_V@)
  80 am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
  81 am__v_lt_0 = --silent
  82 am__v_lt_1 =
  83 am_fastq_kmers_OBJECTS = fastq-kmers.$(OBJEXT) $(am__objects_1) \
  84         $(am__objects_2)
  85 fastq_kmers_OBJECTS = $(am_fastq_kmers_OBJECTS)
  86 fastq_kmers_LDADD = $(LDADD)
  87 am__objects_3 = sw.$(OBJEXT)
  88 am_fastq_match_OBJECTS = fastq-match.$(OBJEXT) $(am__objects_1) \
  89         $(am__objects_2) $(am__objects_3)
  90 fastq_match_OBJECTS = $(am_fastq_match_OBJECTS)
  91 fastq_match_LDADD = $(LDADD)
  92 am_fastq_qscale_OBJECTS = fastq-qscale.$(OBJEXT) $(am__objects_1) \
  93         $(am__objects_2)
  94 fastq_qscale_OBJECTS = $(am_fastq_qscale_OBJECTS)
  95 fastq_qscale_LDADD = $(LDADD)
  96 am_fastq_qual_OBJECTS = fastq-qual.$(OBJEXT) $(am__objects_1) \
  97         $(am__objects_2)
  98 fastq_qual_OBJECTS = $(am_fastq_qual_OBJECTS)
  99 fastq_qual_LDADD = $(LDADD)
 100 am_fastq_qualadj_OBJECTS = fastq-qualadj.$(OBJEXT) $(am__objects_1) \
 101         $(am__objects_2)
 102 fastq_qualadj_OBJECTS = $(am_fastq_qualadj_OBJECTS)
 103 fastq_qualadj_LDADD = $(LDADD)
 104 am__objects_4 = rng.$(OBJEXT)
 105 am_fastq_sample_OBJECTS = fastq-sample.$(OBJEXT) $(am__objects_1) \
 106         $(am__objects_2) $(am__objects_4)
 107 fastq_sample_OBJECTS = $(am_fastq_sample_OBJECTS)
 108 fastq_sample_LDADD = $(LDADD)
 109 am_fastq_sort_OBJECTS = fastq-sort.$(OBJEXT) $(am__objects_1) \
 110         $(am__objects_2)
 111 fastq_sort_OBJECTS = $(am_fastq_sort_OBJECTS)
 112 fastq_sort_LDADD = $(LDADD)
 113 am__objects_5 = hash_table.$(OBJEXT)
 114 am_fastq_uniq_OBJECTS = fastq-uniq.$(OBJEXT) $(am__objects_1) \
 115         $(am__objects_2) $(am__objects_5)
 116 fastq_uniq_OBJECTS = $(am_fastq_uniq_OBJECTS)
 117 fastq_uniq_LDADD = $(LDADD)
 118 AM_V_P = $(am__v_P_@AM_V@)
 119 am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
 120 am__v_P_0 = false
 121 am__v_P_1 = :
 122 AM_V_GEN = $(am__v_GEN_@AM_V@)
 123 am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
 124 am__v_GEN_0 = @echo "  GEN     " $@;
 125 am__v_GEN_1 =
 126 AM_V_at = $(am__v_at_@AM_V@)
 127 am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
 128 am__v_at_0 = @
 129 am__v_at_1 =
 130 DEFAULT_INCLUDES = -I.@am__isrc@
 131 depcomp = $(SHELL) $(top_srcdir)/depcomp
 132 am__depfiles_maybe = depfiles
 133 am__mv = mv -f
 134 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
 135         $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
 136 LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
 137         $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \
 138         $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
 139         $(AM_CFLAGS) $(CFLAGS)
 140 AM_V_CC = $(am__v_CC_@AM_V@)
 141 am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@)
 142 am__v_CC_0 = @echo "  CC      " $@;
 143 am__v_CC_1 =
 144 CCLD = $(CC)
 145 LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
 146         $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
 147         $(AM_LDFLAGS) $(LDFLAGS) -o $@
 148 AM_V_CCLD = $(am__v_CCLD_@AM_V@)
 149 am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@)
 150 am__v_CCLD_0 = @echo "  CCLD    " $@;
 151 am__v_CCLD_1 =
 152 SOURCES = $(fastq_grep_SOURCES) $(fastq_kmers_SOURCES) \
 153         $(fastq_match_SOURCES) $(fastq_qscale_SOURCES) \
 154         $(fastq_qual_SOURCES) $(fastq_qualadj_SOURCES) \
 155         $(fastq_sample_SOURCES) $(fastq_sort_SOURCES) \
 156         $(fastq_uniq_SOURCES)
 157 DIST_SOURCES = $(fastq_grep_SOURCES) $(fastq_kmers_SOURCES) \
 158         $(fastq_match_SOURCES) $(fastq_qscale_SOURCES) \
 159         $(fastq_qual_SOURCES) $(fastq_qualadj_SOURCES) \
 160         $(fastq_sample_SOURCES) $(fastq_sort_SOURCES) \
 161         $(fastq_uniq_SOURCES)
 162 am__can_run_installinfo = \
 163   case $$AM_UPDATE_INFO_DIR in \
 164     n|no|NO) false;; \
 165     *) (install-info --version) >/dev/null 2>&1;; \
 166   esac
 167 am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
 168 # Read a list of newline-separated strings from the standard input,
 169 # and print each of them once, without duplicates.  Input order is
 170 # *not* preserved.
 171 am__uniquify_input = $(AWK) '\
 172   BEGIN { nonempty = 0; } \
 173   { items[$$0] = 1; nonempty = 1; } \
 174   END { if (nonempty) { for (i in items) print i; }; } \
 175 '
 176 # Make sure the list of sources is unique.  This is necessary because,
 177 # e.g., the same source file might be shared among _SOURCES variables
 178 # for different programs/libraries.
 179 am__define_uniq_tagged_files = \
 180   list='$(am__tagged_files)'; \
 181   unique=`for i in $$list; do \
 182     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 183   done | $(am__uniquify_input)`
 184 ETAGS = etags
 185 CTAGS = ctags
 186 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 187 ACLOCAL = @ACLOCAL@
 188 AMTAR = @AMTAR@
 189 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 190 AR = @AR@
 191 AUTOCONF = @AUTOCONF@
 192 AUTOHEADER = @AUTOHEADER@
 193 AUTOMAKE = @AUTOMAKE@
 194 AWK = @AWK@
 195 CC = @CC@
 196 CCDEPMODE = @CCDEPMODE@
 197 CFLAGS = @CFLAGS@
 198 CPP = @CPP@
 199 CPPFLAGS = @CPPFLAGS@
 200 CYGPATH_W = @CYGPATH_W@
 201 DEFS = @DEFS@
 202 DEPDIR = @DEPDIR@
 203 DLLTOOL = @DLLTOOL@
 204 DSYMUTIL = @DSYMUTIL@
 205 DUMPBIN = @DUMPBIN@
 206 ECHO_C = @ECHO_C@
 207 ECHO_N = @ECHO_N@
 208 ECHO_T = @ECHO_T@
 209 EGREP = @EGREP@
 210 EXEEXT = @EXEEXT@
 211 FGREP = @FGREP@
 212 GREP = @GREP@
 213 HAVE_PCRE = @HAVE_PCRE@
 214 INSTALL = @INSTALL@
 215 INSTALL_DATA = @INSTALL_DATA@
 216 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 217 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 218 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
 219 LD = @LD@
 220 LDFLAGS = @LDFLAGS@
 221 LIBOBJS = @LIBOBJS@
 222 LIBS = @LIBS@
 223 LIBTOOL = @LIBTOOL@
 224 LIPO = @LIPO@
 225 LN_S = @LN_S@
 226 LTLIBOBJS = @LTLIBOBJS@
 227 MAKEINFO = @MAKEINFO@
 228 MANIFEST_TOOL = @MANIFEST_TOOL@
 229 MKDIR_P = @MKDIR_P@
 230 NM = @NM@
 231 NMEDIT = @NMEDIT@
 232 OBJDUMP = @OBJDUMP@
 233 OBJEXT = @OBJEXT@
 234 OTOOL = @OTOOL@
 235 OTOOL64 = @OTOOL64@
 236 PACKAGE = @PACKAGE@
 237 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
 238 PACKAGE_NAME = @PACKAGE_NAME@
 239 PACKAGE_STRING = @PACKAGE_STRING@
 240 PACKAGE_TARNAME = @PACKAGE_TARNAME@
 241 PACKAGE_URL = @PACKAGE_URL@
 242 PACKAGE_VERSION = @PACKAGE_VERSION@
 243 PATH_SEPARATOR = @PATH_SEPARATOR@
 244 PCRE_LIBS = @PCRE_LIBS@
 245 RANLIB = @RANLIB@
 246 SED = @SED@
 247 SET_MAKE = @SET_MAKE@
 248 SHELL = @SHELL@
 249 STRIP = @STRIP@
 250 VERSION = @VERSION@
 251 abs_builddir = @abs_builddir@
 252 abs_srcdir = @abs_srcdir@
 253 abs_top_builddir = @abs_top_builddir@
 254 abs_top_srcdir = @abs_top_srcdir@
 255 ac_ct_AR = @ac_ct_AR@
 256 ac_ct_CC = @ac_ct_CC@
 257 ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
 258 am__include = @am__include@
 259 am__leading_dot = @am__leading_dot@
 260 am__quote = @am__quote@
 261 am__tar = @am__tar@
 262 am__untar = @am__untar@
 263 bindir = @bindir@
 264 build = @build@
 265 build_alias = @build_alias@
 266 build_cpu = @build_cpu@
 267 build_os = @build_os@
 268 build_vendor = @build_vendor@
 269 builddir = @builddir@
 270 datadir = @datadir@
 271 datarootdir = @datarootdir@
 272 docdir = @docdir@
 273 dvidir = @dvidir@
 274 exec_prefix = @exec_prefix@
 275 host = @host@
 276 host_alias = @host_alias@
 277 host_cpu = @host_cpu@
 278 host_os = @host_os@
 279 host_vendor = @host_vendor@
 280 htmldir = @htmldir@
 281 includedir = @includedir@
 282 infodir = @infodir@
 283 install_sh = @install_sh@
 284 libdir = @libdir@
 285 libexecdir = @libexecdir@
 286 localedir = @localedir@
 287 localstatedir = @localstatedir@
 288 mandir = @mandir@
 289 mkdir_p = @mkdir_p@
 290 oldincludedir = @oldincludedir@
 291 pdfdir = @pdfdir@
 292 prefix = @prefix@
 293 program_transform_name = @program_transform_name@
 294 psdir = @psdir@
 295 sbindir = @sbindir@
 296 sharedstatedir = @sharedstatedir@
 297 srcdir = @srcdir@
 298 sysconfdir = @sysconfdir@
 299 target_alias = @target_alias@
 300 top_build_prefix = @top_build_prefix@
 301 top_builddir = @top_builddir@
 302 top_srcdir = @top_srcdir@
 303 fastq_common_src = common.h common.c
 304 fastq_parse_src = parse.h parse.c
 305 fastq_sw_src = sw.h sw.c
 306 fastq_hash_table_src = hash_table.h hash_table.c
 307 fastq_rng_src = rng.h rng.c
 308 fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
 309 fastq_grep_LDADD = $(PCRE_LIBS)
 310 fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
 311 fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
 312 fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_table_src)
 313 fastq_qual_SOURCES = fastq-qual.c $(fastq_common_src) $(fastq_parse_src)
 314 fastq_sample_SOURCES = fastq-sample.c $(fastq_common_src) $(fastq_parse_src) $(fastq_rng_src)
 315 fastq_qualadj_SOURCES = fastq-qualadj.c $(fastq_common_src) $(fastq_parse_src)
 316 fastq_sort_SOURCES = fastq-sort.c $(fastq_common_src) $(fastq_parse_src)
 317 fastq_qscale_SOURCES = fastq-qscale.c $(fastq_common_src) $(fastq_parse_src)
 318 all: all-am
 319
 320 .SUFFIXES:
 321 .SUFFIXES: .c .lo .o .obj
 322 $(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
 323         @for dep in $?; do \
 324           case '$(am__configure_deps)' in \
 325             *$$dep*) \
 326               ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
 327                 && { if test -f $@; then exit 0; else break; fi; }; \
 328               exit 1;; \
 329           esac; \
 330         done; \
 331         echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign src/Makefile'; \
 332         $(am__cd) $(top_srcdir) && \
 333           $(AUTOMAKE) --foreign src/Makefile
 334 .PRECIOUS: Makefile
 335 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 336         @case '$?' in \
 337           *config.status*) \
 338             cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
 339           *) \
 340             echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 341             cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 342         esac;
 343
 344 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 345         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 346
 347 $(top_srcdir)/configure:  $(am__configure_deps)
 348         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 349 $(ACLOCAL_M4):  $(am__aclocal_m4_deps)
 350         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 351 $(am__aclocal_m4_deps):
 352 version.h: $(top_builddir)/config.status $(srcdir)/version.h.in
 353         cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
 354 install-binPROGRAMS: $(bin_PROGRAMS)
 355         @$(NORMAL_INSTALL)
 356         @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
 357         if test -n "$$list"; then \
 358           echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
 359           $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
 360         fi; \
 361         for p in $$list; do echo "$$p $$p"; done | \
 362         sed 's/$(EXEEXT)$$//' | \
 363         while read p p1; do if test -f $$p \
 364          || test -f $$p1 \
 365           ; then echo "$$p"; echo "$$p"; else :; fi; \
 366         done | \
 367         sed -e 'p;s,.*/,,;n;h' \
 368             -e 's|.*|.|' \
 369             -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
 370         sed 'N;N;N;s,\n, ,g' | \
 371         $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
 372           { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
 373             if ($$2 == $$4) files[d] = files[d] " " $$1; \
 374             else { print "f", $$3 "/" $$4, $$1; } } \
 375           END { for (d in files) print "f", d, files[d] }' | \
 376         while read type dir files; do \
 377             if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
 378             test -z "$$files" || { \
 379             echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
 380             $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
 381             } \
 382         ; done
 383
 384 uninstall-binPROGRAMS:
 385         @$(NORMAL_UNINSTALL)
 386         @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
 387         files=`for p in $$list; do echo "$$p"; done | \
 388           sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
 389               -e 's/$$/$(EXEEXT)/' \
 390         `; \
 391         test -n "$$list" || exit 0; \
 392         echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
 393         cd "$(DESTDIR)$(bindir)" && rm -f $$files
 394
 395 clean-binPROGRAMS:
 396         @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \
 397         echo " rm -f" $$list; \
 398         rm -f $$list || exit $$?; \
 399         test -n "$(EXEEXT)" || exit 0; \
 400         list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
 401         echo " rm -f" $$list; \
 402         rm -f $$list
 403 fastq-grep$(EXEEXT): $(fastq_grep_OBJECTS) $(fastq_grep_DEPENDENCIES) $(EXTRA_fastq_grep_DEPENDENCIES)
 404         @rm -f fastq-grep$(EXEEXT)
 405         $(AM_V_CCLD)$(LINK) $(fastq_grep_OBJECTS) $(fastq_grep_LDADD) $(LIBS)
 406 fastq-kmers$(EXEEXT): $(fastq_kmers_OBJECTS) $(fastq_kmers_DEPENDENCIES) $(EXTRA_fastq_kmers_DEPENDENCIES)
 407         @rm -f fastq-kmers$(EXEEXT)
 408         $(AM_V_CCLD)$(LINK) $(fastq_kmers_OBJECTS) $(fastq_kmers_LDADD) $(LIBS)
 409 fastq-match$(EXEEXT): $(fastq_match_OBJECTS) $(fastq_match_DEPENDENCIES) $(EXTRA_fastq_match_DEPENDENCIES)
 410         @rm -f fastq-match$(EXEEXT)
 411         $(AM_V_CCLD)$(LINK) $(fastq_match_OBJECTS) $(fastq_match_LDADD) $(LIBS)
 412 fastq-qscale$(EXEEXT): $(fastq_qscale_OBJECTS) $(fastq_qscale_DEPENDENCIES) $(EXTRA_fastq_qscale_DEPENDENCIES)
 413         @rm -f fastq-qscale$(EXEEXT)
 414         $(AM_V_CCLD)$(LINK) $(fastq_qscale_OBJECTS) $(fastq_qscale_LDADD) $(LIBS)
 415 fastq-qual$(EXEEXT): $(fastq_qual_OBJECTS) $(fastq_qual_DEPENDENCIES) $(EXTRA_fastq_qual_DEPENDENCIES)
 416         @rm -f fastq-qual$(EXEEXT)
 417         $(AM_V_CCLD)$(LINK) $(fastq_qual_OBJECTS) $(fastq_qual_LDADD) $(LIBS)
 418 fastq-qualadj$(EXEEXT): $(fastq_qualadj_OBJECTS) $(fastq_qualadj_DEPENDENCIES) $(EXTRA_fastq_qualadj_DEPENDENCIES)
 419         @rm -f fastq-qualadj$(EXEEXT)
 420         $(AM_V_CCLD)$(LINK) $(fastq_qualadj_OBJECTS) $(fastq_qualadj_LDADD) $(LIBS)
 421 fastq-sample$(EXEEXT): $(fastq_sample_OBJECTS) $(fastq_sample_DEPENDENCIES) $(EXTRA_fastq_sample_DEPENDENCIES)
 422         @rm -f fastq-sample$(EXEEXT)
 423         $(AM_V_CCLD)$(LINK) $(fastq_sample_OBJECTS) $(fastq_sample_LDADD) $(LIBS)
 424 fastq-sort$(EXEEXT): $(fastq_sort_OBJECTS) $(fastq_sort_DEPENDENCIES) $(EXTRA_fastq_sort_DEPENDENCIES)
 425         @rm -f fastq-sort$(EXEEXT)
 426         $(AM_V_CCLD)$(LINK) $(fastq_sort_OBJECTS) $(fastq_sort_LDADD) $(LIBS)
 427 fastq-uniq$(EXEEXT): $(fastq_uniq_OBJECTS) $(fastq_uniq_DEPENDENCIES) $(EXTRA_fastq_uniq_DEPENDENCIES)
 428         @rm -f fastq-uniq$(EXEEXT)
 429         $(AM_V_CCLD)$(LINK) $(fastq_uniq_OBJECTS) $(fastq_uniq_LDADD) $(LIBS)
 430
 431 mostlyclean-compile:
 432         -rm -f *.$(OBJEXT)
 433
 434 distclean-compile:
 435         -rm -f *.tab.c
 436
 437 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/common.Po@am__quote@
 438 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-grep.Po@am__quote@
 439 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-kmers.Po@am__quote@
 440 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-match.Po@am__quote@
 441 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-qscale.Po@am__quote@
 442 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-qual.Po@am__quote@
 443 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-qualadj.Po@am__quote@
 444 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-sample.Po@am__quote@
 445 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-sort.Po@am__quote@
 446 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fastq-uniq.Po@am__quote@
 447 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_table.Po@am__quote@
 448 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/parse.Po@am__quote@
 449 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/rng.Po@am__quote@
 450 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sw.Po@am__quote@
 451
 452 .c.o:
 453 @am__fastdepCC_TRUE@    $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
 454 @am__fastdepCC_TRUE@    $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 455 @AMDEP_TRUE@@am__fastdepCC_FALSE@       $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 456 @AMDEP_TRUE@@am__fastdepCC_FALSE@       DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 457 @am__fastdepCC_FALSE@   $(AM_V_CC@am__nodep@)$(COMPILE) -c $<
 458
 459 .c.obj:
 460 @am__fastdepCC_TRUE@    $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
 461 @am__fastdepCC_TRUE@    $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 462 @AMDEP_TRUE@@am__fastdepCC_FALSE@       $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 463 @AMDEP_TRUE@@am__fastdepCC_FALSE@       DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 464 @am__fastdepCC_FALSE@   $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'`
 465
 466 .c.lo:
 467 @am__fastdepCC_TRUE@    $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
 468 @am__fastdepCC_TRUE@    $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
 469 @AMDEP_TRUE@@am__fastdepCC_FALSE@       $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
 470 @AMDEP_TRUE@@am__fastdepCC_FALSE@       DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 471 @am__fastdepCC_FALSE@   $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $<
 472
 473 mostlyclean-libtool:
 474         -rm -f *.lo
 475
 476 clean-libtool:
 477         -rm -rf .libs _libs
 478
 479 ID: $(am__tagged_files)
 480         $(am__define_uniq_tagged_files); mkid -fID $$unique
 481 tags: tags-am
 482 TAGS: tags
 483
 484 tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
 485         set x; \
 486         here=`pwd`; \
 487         $(am__define_uniq_tagged_files); \
 488         shift; \
 489         if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
 490           test -n "$$unique" || unique=$$empty_fix; \
 491           if test $$# -gt 0; then \
 492             $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
 493               "$$@" $$unique; \
 494           else \
 495             $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
 496               $$unique; \
 497           fi; \
 498         fi
 499 ctags: ctags-am
 500
 501 CTAGS: ctags
 502 ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
 503         $(am__define_uniq_tagged_files); \
 504         test -z "$(CTAGS_ARGS)$$unique" \
 505           || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
 506              $$unique
 507
 508 GTAGS:
 509         here=`$(am__cd) $(top_builddir) && pwd` \
 510           && $(am__cd) $(top_srcdir) \
 511           && gtags -i $(GTAGS_ARGS) "$$here"
 512 cscopelist: cscopelist-am
 513
 514 cscopelist-am: $(am__tagged_files)
 515         list='$(am__tagged_files)'; \
 516         case "$(srcdir)" in \
 517           [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \
 518           *) sdir=$(subdir)/$(srcdir) ;; \
 519         esac; \
 520         for i in $$list; do \
 521           if test -f "$$i"; then \
 522             echo "$(subdir)/$$i"; \
 523           else \
 524             echo "$$sdir/$$i"; \
 525           fi; \
 526         done >> $(top_builddir)/cscope.files
 527
 528 distclean-tags:
 529         -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 530
 531 distdir: $(DISTFILES)
 532         @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 533         topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 534         list='$(DISTFILES)'; \
 535           dist_files=`for file in $$list; do echo $$file; done | \
 536           sed -e "s|^$$srcdirstrip/||;t" \
 537               -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
 538         case $$dist_files in \
 539           */*) $(MKDIR_P) `echo "$$dist_files" | \
 540                            sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
 541                            sort -u` ;; \
 542         esac; \
 543         for file in $$dist_files; do \
 544           if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 545           if test -d $$d/$$file; then \
 546             dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
 547             if test -d "$(distdir)/$$file"; then \
 548               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 549             fi; \
 550             if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
 551               cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
 552               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 553             fi; \
 554             cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
 555           else \
 556             test -f "$(distdir)/$$file" \
 557             || cp -p $$d/$$file "$(distdir)/$$file" \
 558             || exit 1; \
 559           fi; \
 560         done
 561 check-am: all-am
 562 check: check-am
 563 all-am: Makefile $(PROGRAMS)
 564 installdirs:
 565         for dir in "$(DESTDIR)$(bindir)"; do \
 566           test -z "$$dir" || $(MKDIR_P) "$$dir"; \
 567         done
 568 install: install-am
 569 install-exec: install-exec-am
 570 install-data: install-data-am
 571 uninstall: uninstall-am
 572
 573 install-am: all-am
 574         @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
 575
 576 installcheck: installcheck-am
 577 install-strip:
 578         if test -z '$(STRIP)'; then \
 579           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 580             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 581               install; \
 582         else \
 583           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 584             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 585             "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
 586         fi
 587 mostlyclean-generic:
 588
 589 clean-generic:
 590
 591 distclean-generic:
 592         -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
 593         -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
 594
 595 maintainer-clean-generic:
 596         @echo "This command is intended for maintainers to use"
 597         @echo "it deletes files that may require special tools to rebuild."
 598 clean: clean-am
 599
 600 clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
 601
 602 distclean: distclean-am
 603         -rm -rf ./$(DEPDIR)
 604         -rm -f Makefile
 605 distclean-am: clean-am distclean-compile distclean-generic \
 606         distclean-tags
 607
 608 dvi: dvi-am
 609
 610 dvi-am:
 611
 612 html: html-am
 613
 614 html-am:
 615
 616 info: info-am
 617
 618 info-am:
 619
 620 install-data-am:
 621
 622 install-dvi: install-dvi-am
 623
 624 install-dvi-am:
 625
 626 install-exec-am: install-binPROGRAMS
 627
 628 install-html: install-html-am
 629
 630 install-html-am:
 631
 632 install-info: install-info-am
 633
 634 install-info-am:
 635
 636 install-man:
 637
 638 install-pdf: install-pdf-am
 639
 640 install-pdf-am:
 641
 642 install-ps: install-ps-am
 643
 644 install-ps-am:
 645
 646 installcheck-am:
 647
 648 maintainer-clean: maintainer-clean-am
 649         -rm -rf ./$(DEPDIR)
 650         -rm -f Makefile
 651 maintainer-clean-am: distclean-am maintainer-clean-generic
 652
 653 mostlyclean: mostlyclean-am
 654
 655 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
 656         mostlyclean-libtool
 657
 658 pdf: pdf-am
 659
 660 pdf-am:
 661
 662 ps: ps-am
 663
 664 ps-am:
 665
 666 uninstall-am: uninstall-binPROGRAMS
 667
 668 .MAKE: install-am install-strip
 669
 670 .PHONY: CTAGS GTAGS TAGS all all-am check check-am clean \
 671         clean-binPROGRAMS clean-generic clean-libtool cscopelist-am \
 672         ctags ctags-am distclean distclean-compile distclean-generic \
 673         distclean-libtool distclean-tags distdir dvi dvi-am html \
 674         html-am info info-am install install-am install-binPROGRAMS \
 675         install-data install-data-am install-dvi install-dvi-am \
 676         install-exec install-exec-am install-html install-html-am \
 677         install-info install-info-am install-man install-pdf \
 678         install-pdf-am install-ps install-ps-am install-strip \
 679         installcheck installcheck-am installdirs maintainer-clean \
 680         maintainer-clean-generic mostlyclean mostlyclean-compile \
 681         mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
 682         tags tags-am uninstall uninstall-am uninstall-binPROGRAMS
 683
 684
 685 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 686 # Otherwise a system limit (for SysV at least) may be exceeded.
 687 .NOEXPORT: