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fastq-tools.git
2013-12-17
Don Armstrong
Merge tag 'upstream/0.6'
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2013-12-17
Don Armstrong
Imported Upstream version 0.6
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2013-06-19
Daniel Jones
Fix linker error for fastq-sample. (fixes #4)
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2013-06-19
Daniel Jones
Add missing man page (fixes #5)
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2013-02-22
Daniel Jones
Link against libm
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2013-02-20
Daniel Jones
Add missing sys/stat.h include.
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2012-12-14
Daniel Jones
Add a program to detect quality score encoding (fastq...
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2012-12-10
Daniel Jones
HTML output for man pages.
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2012-12-09
Daniel Jones
Man page for fastq-sort. Bump version.
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2012-12-09
Daniel Jones
Sort by gc content and mean quality score, and seededin...
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2012-12-09
Daniel Jones
Fix a bug causing random sort to be not so random.
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2012-12-09
Daniel Jones
Rename hash to hash_table.
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2012-10-09
Daniel Jones
Buffer size option.
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2012-10-09
Daniel Jones
Reverse sort option.
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2012-10-09
Daniel Jones
An essentially functional fastq-sort program.
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2012-10-09
Daniel Jones
WIP on a fastq-sort program.
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2012-10-09
Daniel Jones
Fix the weird output behavior of fastq-sample.
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2012-10-09
Daniel Jones
Much simpler faster code for parsing fastq files.
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2011-12-12
Daniel Jones
An option for fastq-grep to output non-matching entries...
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2011-11-22
Daniel Jones
Add the offset, not subtract.
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2011-11-22
Daniel Jones
Remove an extraneous printf.
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2011-11-22
Daniel Jones
fastq-qualadj: Prevent getopt from choking on negative...
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2011-11-22
Daniel Jones
Added a program to adjust quality scores by a fixed...
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2011-11-18
Daniel Jones
README clarifications.
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2011-11-18
Daniel Jones
Fix inverted match option in fastq-grep.
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2011-10-26
Daniel Jones
fastq-sample: options to set the rng seed and output...
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2011-10-25
Daniel Jones
A program to randomly sample reads from a fastq file.
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2011-10-25
Daniel Jones
An option to let fastq-grep match read ids instead...
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2011-07-08
Daniel Jones
a few fixes, and a program to tabulate quality scores
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2011-04-07
Daniel Jones
man pages
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2011-03-18
Daniel Jones
a little documentation
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2011-03-17
Daniel Jones
(limited) support for fasta
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2011-03-17
Daniel Jones
a program to output a nonredundant list of readss
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2011-03-03
Daniel Caleb...
a couple fixes to smith-waterman
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2011-03-03
Daniel Caleb...
reimplemented smith-waterman
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2011-03-03
Daniel Caleb...
a new and improved parser
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2011-02-26
Daniel Jones
a program to print smith-waterman scores against a...
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2011-02-25
quentin jones
autotool script
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2011-02-25
quentin jones
a program to tally kmer frequencies from fastq files
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2011-02-25
quentin jones
fastq-grep works
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2011-02-25
quentin jones
initial work on some useful fastq tools
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