]> git.donarmstrong.com Git - fastq-tools.git/blob - configure.ac
Added a program to adjust quality scores by a fixed offset.
[fastq-tools.git] / configure.ac
1
2 AC_INIT( [fastq-tools], [0.3], [dcjones@cs.washington.edu] )
3 AM_INIT_AUTOMAKE( [foreign -Wall -Werror] )
4 m4_ifdef([AM_SILENT_RULES],[AM_SILENT_RULES([yes])])
5
6 AC_CONFIG_MACRO_DIR([m4])
7
8 AC_PROG_CC
9 AM_PROG_CC_C_O
10
11 opt_CFLAGS="--std=c99 -Wall -Wextra -pedantic -g -O3"
12 dbg_CFLAGS="--std=c99 -Wall -Wextra -pedantic -g -O0"
13
14 AC_ARG_ENABLE([debug],
15               [AS_HELP_STRING([--enable-debug],
16                               [enable debugging info (default is no)])],
17               [], [enable_debug=no])
18
19 AS_IF([test "x$enable_debug" = xyes],
20       [CFLAGS="$dbg_CFLAGS"],
21       [CFLAGS="$opt_CFLAGS"])
22
23 AC_DEFINE(_FILE_OFFSET_BITS, 64)
24 AC_DEFINE(_POSIX_SOURCE) # needed for fileno
25
26 AC_PROG_LIBTOOL
27
28 AC_CHECK_FUNC(fileno, ,
29               AC_MSG_ERROR([The 'fileno' function is missing.]))
30
31 # check zlib
32 AX_CHECK_ZLIB
33
34 # check pcre
35 AC_CHECK_PROG(HAVE_PCRE, pcre-config, yes, no)
36 if test "x$HAVE_PCRE" = "xno"
37 then
38     AC_MSG_ERROR([The PCRE library is needed. See http://www.pcre.org.])
39 fi
40 CFLAGS="$CFLAGS $(pcre-config --cflags)"
41 PCRE_LIBS="$(pcre-config --libs)"
42 AC_SUBST(PCRE_LIBS)
43
44 # check getopt
45 AC_CHECK_HEADER(getopt.h, ,
46                 AC_MSG_ERROR([The posix getopt.h header is needed.]))
47
48
49 CXXFLAGS=$CFLAGS
50
51 AC_CONFIG_FILES([Makefile
52                  src/Makefile
53                  doc/Makefile
54                  src/version.h])
55
56 AC_OUTPUT