3 DATA_DIR=/srv/ncbi/refseq/
4 SCHEMA_DIR=/srv/ncbi/db_snp_utils/schema
5 UTIL_DIR=${SCHEMA_DIR}/../utils/
8 psql snp < ${SCHEMA_DIR}/extra_schema/mrna_cds_table.sql
9 psql snp < ${SCHEMA_DIR}/extra_schema/intron_exon_schema.sql
11 zcat ${DATA_DIR}/human.rna.gbff.gz | \
12 ${UTIL_DIR}/human_mrna_cds_insert.pl | \
13 psql snp -c "COPY mrna_cds_table FROM STDIN WITH DELIMITER ' ' NULL AS 'NULL'";
15 zcat ${DATA_DIR}/seq_contig.md.gz | \
16 ${UTIL_DIR}/import_seq_component_md.pl | \
17 psql snp -c "COPY contigs FROM STDIN WITH DELIMITER ' ' NULL AS 'NULL'";
19 zcat ${DATA_DIR}/CHR_*/hs_ref_GRCh37.p*_*.gbs.gz | \
20 ${UTIL_DIR}/intron_exon_loader.pl --type mrna| \
21 psql snp -c "COPY mrna FROM STDIN WITH DELIMITER ' ' NULL AS 'NULL'";
23 zcat ${DATA_DIR}/CHR_*/hs_ref_GRCh37.p*_*.gbs.gz | \
24 ${UTIL_DIR}/intron_exon_loader.pl --type cds| \
25 psql snp -c "COPY cds FROM STDIN WITH DELIMITER ' ' NULL AS 'NULL'";