PackagesWithIssues.txt

   1 debian-i386
   2
   3 Package         Needs                   License         Other
   4 =================================================================================
   5
   6 RESOLVED
   7 ---------------------------------------------------------------------------------
   8 BARD                                    AGPL -- added
   9 DierckxSpline                                           new version built
  10 FAiR                                    AGPL -- added
  11 StatFingerprints                                        now builds
  12 WriteXLS                                                (lots of) sysreq ignore added
  13 mlbench                                 added
  14 adabag          mlbench
  15 ipred           mlbench
  16
  17 OPEN ISSUES
  18 ---------------------------------------------------------------------------------
  19 ADaCGH          tilingArray (BioC)
  20 BayesTree                                               C++ patch ?
  21 DAAGbio         limma (BioC ?)
  22 multtest        BioBase (BioC ?)
  23 GExMap          multtest (BioC)
  24 LMGene          multtest (BioC)
  25 GFMaps          affy (BioC)
  26 GOSim           GO.db (BioC)
  27 Geneland        mapproj
  28 HAPim                                                   odd build failure
  29 MatchIt                                                 need small patch
  30 Metabonomic     PROcess (BioC ?)
  31 PhViD           LBE ????
  32 RJaCGH                                                  contains zli, may need patch
  33 RLadyBug                                                needs small patch
  34 Rsymphony                                               build bombs, patch ?, Debian build
  35 SNPMaP          affxparser, SNPMaP.cdm (BioC)
  36 SubpathwayMiner KEGG.db (BioC)
  37 SuppDists                                               build bombs, unclear why
  38 TSpaid                                                  build bombs, wild linking ?
  39 alphahull       removed ?
  40
  41 REJECTED
  42 ---------------------------------------------------------------------------------------------
  43 gpclib                                  non-commercial
  44 AIGIS           gpclib                  non-commercial
  45 DSpat           spatstat -> gpclib      non-commercial
  46 SGCS            spatstat -> gpclib
  47 RSurvey         gpclib                  non-commercial
  48 CoCo                                    not-for-profit
  49 ConCalendar                             non-commercial
  50 EMCC            mclust
  51 StatDA          mclust
  52 mapproj                                 non-commercial
  53 Geneland        mapproj                 non-commercial
  54 PTAk                                    non-commercial
  55 SDDA                                    non-commercial  CSIRO license
  56 optmatch                                non-commercial
  57 SpectralGEM     optmatch                non-commercial
  58 realized                                non-commercial
  59
  60 CANNOT BUILD
  61 ----------------------------------------------------------------------------------------------
  62 CarbonEL                                                Mac OS X only
  63 ROracle                                                 requires Oracle libs
  64 RScaLAPAPCK     licese is free                          MPI, Blacs, ScaLAPACK, ...
  65 Rcplex                                                  CPLEX library
  66 Rlsf                                                    LSF required
  67 Rsge                                                    SGE required
  68 VhayuR                                                  Vhauy required
  69
  70
  71 TODO:
  72 alphahull,arrayImpute,arrayMissPattern,ash,aspace,asypow,bayesCGH,caMassClass,celsius,
  73 chemometrics,clValid,classGraph,clustTool,clustvarsel,crosshybDetector,dlmap,ecesp
  74 a,fPortfolio,gWidgetsWWW,gcExplorer,gene2pathway,gmvalid,gpclib,gputools,hopach,
  75 ipred,klaR,latentnetHRT,logilasso,lsa,mapproj,mclust,mclust02,metaMA,mpm,multtest,mvgraph,
  76 pcalg,qAnalyst,qdg,rSymPy,race,rankreg,rgrs,rimage,rngwell19937,sabreR,scagnostics,
  77 sdcMicro,seewave,seqinr,sgeostat,sisus,snpXpert,spatclus,spatialkernel,spatstat
  78 survcomp,svGUI,svSocket,tlnise,tossm,tsModel,vabayelMix,wgaim,xgobi