added file with log of per-package issues

as of right now, about half-way through

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/cran2deb@226 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

diff --git a/PackagesWithIssues.txt b/PackagesWithIssues.txt
new file mode 100644 (file)
index 0000000..de207d4
--- /dev/null
+++ b/PackagesWithIssues.txt
@@ -0,0 +1,78 @@
+debian-i386
+
+Package                Needs                   License         Other
+=================================================================================
+
+RESOLVED
+---------------------------------------------------------------------------------
+BARD                                   AGPL -- added
+DierckxSpline                                          new version built
+FAiR                                   AGPL -- added
+StatFingerprints                                       now builds
+WriteXLS                                               (lots of) sysreq ignore added
+mlbench                                        added
+adabag         mlbench                                 
+ipred          mlbench                                 
+
+OPEN ISSUES
+---------------------------------------------------------------------------------
+ADaCGH         tilingArray (BioC)
+BayesTree                                              C++ patch ?
+DAAGbio                limma (BioC ?)
+multtest       BioBase (BioC ?)
+GExMap         multtest (BioC)
+LMGene         multtest (BioC)
+GFMaps         affy (BioC)
+GOSim          GO.db (BioC)
+Geneland       mapproj
+HAPim                                                  odd build failure
+MatchIt                                                        need small patch
+Metabonomic    PROcess (BioC ?)
+PhViD          LBE ????
+RJaCGH                                                 contains zli, may need patch
+RLadyBug                                               needs small patch
+Rsymphony                                              build bombs, patch ?, Debian build
+SNPMaP         affxparser, SNPMaP.cdm (BioC)                                           
+SubpathwayMiner KEGG.db (BioC)
+SuppDists                                              build bombs, unclear why
+TSpaid                                                 build bombs, wild linking ?
+alphahull      removed ?
+                                                                                               
+REJECTED
+---------------------------------------------------------------------------------------------
+gpclib                                 non-commercial
+AIGIS          gpclib                  non-commercial
+DSpat          spatstat -> gpclib      non-commercial
+SGCS           spatstat -> gpclib
+RSurvey                gpclib                  non-commercial
+CoCo                                   not-for-profit
+ConCalendar                            non-commercial
+EMCC           mclust
+StatDA         mclust
+mapproj                                        non-commercial
+Geneland       mapproj                 non-commercial                  
+PTAk                                   non-commercial
+SDDA                                   non-commercial  CSIRO license
+optmatch                               non-commercial
+SpectralGEM    optmatch                non-commercial                  
+realized                               non-commercial
+
+CANNOT BUILD
+----------------------------------------------------------------------------------------------
+CarbonEL                                               Mac OS X only
+ROracle                                                        requires Oracle libs
+RScaLAPAPCK    licese is free                          MPI, Blacs, ScaLAPACK, ...                                      
+Rcplex                                                 CPLEX library                                   
+Rlsf                                                   LSF required
+Rsge                                                   SGE required
+VhayuR                                                 Vhauy required
+
+
+TODO:
+alphahull,arrayImpute,arrayMissPattern,ash,aspace,asypow,bayesCGH,caMassClass,celsius,
+chemometrics,clValid,classGraph,clustTool,clustvarsel,crosshybDetector,dlmap,ecesp
+a,fPortfolio,gWidgetsWWW,gcExplorer,gene2pathway,gmvalid,gpclib,gputools,hopach,
+ipred,klaR,latentnetHRT,logilasso,lsa,mapproj,mclust,mclust02,metaMA,mpm,multtest,mvgraph,
+pcalg,qAnalyst,qdg,rSymPy,race,rankreg,rgrs,rimage,rngwell19937,sabreR,scagnostics,
+sdcMicro,seewave,seqinr,sgeostat,sisus,snpXpert,spatclus,spatialkernel,spatstat
+survcomp,svGUI,svSocket,tlnise,tossm,tsModel,vabayelMix,wgaim,xgobi