PackagesWithIssues.txt

   1 debian-i386
   2
   3 Package         Needs                   License         Other
   4 =================================================================================
   5
   6 RESOLVED
   7 ---------------------------------------------------------------------------------
   8 matlab                                  Rice U -- added
   9 rwt             matlab
  10 arrayImpute     matlab
  11 rtiff                                   tiff + gpl -- added
  12 sendplot        rtiff
  13 BARD                                    AGPL -- added
  14 DierckxSpline                                           new version built
  15 FAiR                                    AGPL -- added
  16 StatFingerprints                                        now builds
  17 WriteXLS                                                (lots of) sysreq ignore added
  18 mlbench                                 added
  19 adabag          mlbench
  20 ipred           mlbench
  21
  22 OPEN ISSUES
  23 ---------------------------------------------------------------------------------
  24 ADaCGH          tilingArray (BioC)
  25 BayesTree                                               C++ patch ?
  26 DAAGbio         limma (BioC ?)
  27 multtest        BioBase (BioC ?)
  28 GExMap          multtest (BioC)
  29 LMGene          multtest (BioC)
  30 GFMaps          affy (BioC)
  31 GOSim           GO.db (BioC)
  32 Geneland        mapproj
  33 HAPim                                                   odd build failure
  34 MatchIt                                                 need small patch
  35 Metabonomic     PROcess (BioC ?)
  36 PhViD           LBE ????
  37 RJaCGH                                                  contains zli, may need patch
  38 RLadyBug                                                needs small patch
  39 Rsymphony                                               build bombs, patch ?, Debian build
  40 SNPMaP          affxparser, SNPMaP.cdm (BioC)
  41 SubpathwayMiner KEGG.db (BioC)
  42 SuppDists                                               build bombs, unclear why
  43 TSpaid                                                  build bombs, wild linking ?
  44 alphahull       removed ?
  45
  46 REJECTED
  47 ---------------------------------------------------------------------------------------------
  48 gpclib                                  non-commercial
  49 AIGIS           gpclib                  non-commercial
  50 DSpat           spatstat -> gpclib      non-commercial
  51 SGCS            spatstat -> gpclib
  52 RSurvey         gpclib                  non-commercial
  53 CoCo                                    not-for-profit
  54 ConCalendar                             non-commercial
  55 EMCC            mclust
  56 StatDA          mclust
  57 mapproj                                 non-commercial
  58 Geneland        mapproj                 non-commercial
  59 PTAk                                    non-commercial
  60 SDDA                                    non-commercial  CSIRO license
  61 optmatch                                non-commercial
  62 SpectralGEM     optmatch                non-commercial
  63 realized                                non-commercial
  64
  65 CANNOT BUILD
  66 ----------------------------------------------------------------------------------------------
  67 CarbonEL                                                Mac OS X only
  68 ROracle                                                 requires Oracle libs
  69 RScaLAPAPCK     licese is free                          MPI, Blacs, ScaLAPACK, ...
  70 Rcplex                                                  CPLEX library
  71 Rlsf                                                    LSF required
  72 Rsge                                                    SGE required
  73 VhayuR                                                  Vhauy required
  74
  75
  76 TODO:
  77 ,arrayMissPattern,ash,aspace,asypow,bayesCGH,caMassClass,celsius,
  78 chemometrics,clValid,classGraph,clustTool,clustvarsel,crosshybDetector,dlmap,ecesp
  79 a,fPortfolio,gWidgetsWWW,gcExplorer,gene2pathway,gmvalid,gpclib,gputools,hopach,
  80 ipred,klaR,latentnetHRT,logilasso,lsa,mapproj,mclust,mclust02,metaMA,mpm,multtest,mvgraph,
  81 pcalg,qAnalyst,qdg,rSymPy,race,rankreg,rgrs,rimage,rngwell19937,sabreR,scagnostics,
  82 sdcMicro,seewave,seqinr,sgeostat,sisus,snpXpert,spatclus,spatialkernel,spatstat
  83 survcomp,svGUI,svSocket,tlnise,tossm,tsModel,vabayelMix,wgaim,xgobi