debian-i386

Package		Needs			License		Other
=================================================================================

RESOLVED
---------------------------------------------------------------------------------
matlab					Rice U -- added					
rwt		matlab
arrayImpute	matlab
rtiff					tiff + gpl -- added
sendplot	rtiff			
BARD					AGPL -- added
DierckxSpline						new version built
FAiR					AGPL -- added
StatFingerprints					now builds
WriteXLS						(lots of) sysreq ignore added
mlbench					added
adabag		mlbench					
ipred		mlbench					

OPEN ISSUES
---------------------------------------------------------------------------------
ADaCGH		tilingArray (BioC)
BayesTree						C++ patch ?
DAAGbio		limma (BioC ?)
multtest	BioBase (BioC ?)
GExMap		multtest (BioC)
LMGene		multtest (BioC)
GFMaps		affy (BioC)
GOSim		GO.db (BioC)
Geneland	mapproj
HAPim							odd build failure
MatchIt							need small patch
Metabonomic	PROcess (BioC ?)
PhViD 		LBE ????
RJaCGH							contains zli, may need patch
RLadyBug						needs small patch
Rsymphony						build bombs, patch ?, Debian build
SNPMaP		affxparser, SNPMaP.cdm (BioC)						
SubpathwayMiner KEGG.db (BioC)
SuppDists						build bombs, unclear why
TSpaid							build bombs, wild linking ?
alphahull	removed ?
												
REJECTED
---------------------------------------------------------------------------------------------
gpclib					non-commercial
AIGIS		gpclib			non-commercial
DSpat		spatstat -> gpclib	non-commercial
SGCS		spatstat -> gpclib
RSurvey		gpclib			non-commercial
CoCo					not-for-profit
ConCalendar				non-commercial
EMCC		mclust
StatDA		mclust
mapproj					non-commercial
Geneland	mapproj			non-commercial			
PTAk					non-commercial
SDDA					non-commercial	CSIRO license
optmatch				non-commercial
SpectralGEM	optmatch		non-commercial			
realized				non-commercial

CANNOT BUILD
----------------------------------------------------------------------------------------------
CarbonEL						Mac OS X only
ROracle							requires Oracle libs
RScaLAPAPCK	licese is free				MPI, Blacs, ScaLAPACK, ...					
Rcplex							CPLEX library 					
Rlsf							LSF required
Rsge							SGE required
VhayuR							Vhauy required


TODO:
,arrayMissPattern,ash,aspace,asypow,bayesCGH,caMassClass,celsius,
chemometrics,clValid,classGraph,clustTool,clustvarsel,crosshybDetector,dlmap,ecesp
a,fPortfolio,gWidgetsWWW,gcExplorer,gene2pathway,gmvalid,gpclib,gputools,hopach,
ipred,klaR,latentnetHRT,logilasso,lsa,mapproj,mclust,mclust02,metaMA,mpm,multtest,mvgraph,
pcalg,qAnalyst,qdg,rSymPy,race,rankreg,rgrs,rimage,rngwell19937,sabreR,scagnostics,
sdcMicro,seewave,seqinr,sgeostat,sisus,snpXpert,spatclus,spatialkernel,spatstat
survcomp,svGUI,svSocket,tlnise,tossm,tsModel,vabayelMix,wgaim,xgobi