]>
git.donarmstrong.com Git - biopieces.git/log
martinahansen [Wed, 30 Jun 2010 14:29:50 +0000 (14:29 +0000)]
added trim_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@1006
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 29 Jun 2010 12:34:24 +0000 (12:34 +0000)]
added biopieces mean_scores
git-svn-id: http://biopieces.googlecode.com/svn/trunk@1002
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 28 Jun 2010 08:27:47 +0000 (08:27 +0000)]
added ID to SCORE alias in KISS.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@1000
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 28 Jun 2010 08:18:36 +0000 (08:18 +0000)]
added usearch_seq biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@998
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 26 Jun 2010 09:47:45 +0000 (09:47 +0000)]
corrected typo
git-svn-id: http://biopieces.googlecode.com/svn/trunk@995
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 22 Jun 2010 14:49:53 +0000 (14:49 +0000)]
messing with exit in ruby - still
git-svn-id: http://biopieces.googlecode.com/svn/trunk@994
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 22 Jun 2010 09:42:25 +0000 (09:42 +0000)]
corrected type in log messages
git-svn-id: http://biopieces.googlecode.com/svn/trunk@993
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 21 Jun 2010 12:26:25 +0000 (12:26 +0000)]
polishing exit in ruby code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@992
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Jun 2010 12:22:58 +0000 (12:22 +0000)]
added list switch to *_vals biopieces
git-svn-id: http://biopieces.googlecode.com/svn/trunk@990
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Jun 2010 12:05:54 +0000 (12:05 +0000)]
added list switch to mean_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@989
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Jun 2010 11:36:00 +0000 (11:36 +0000)]
added fixedstep biopieces
git-svn-id: http://biopieces.googlecode.com/svn/trunk@987
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Jun 2010 14:05:19 +0000 (14:05 +0000)]
schrubbing UCSC.pm code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@985
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Jun 2010 13:01:14 +0000 (13:01 +0000)]
fixed s/Common/Filesys/ renaming in UCSC.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@984
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Jun 2010 12:41:28 +0000 (12:41 +0000)]
ruby code fixing exit
git-svn-id: http://biopieces.googlecode.com/svn/trunk@983
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Jun 2010 11:55:16 +0000 (11:55 +0000)]
ruby code fixing exit
git-svn-id: http://biopieces.googlecode.com/svn/trunk@982
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 15 Jun 2010 11:55:05 +0000 (11:55 +0000)]
ruby code schrubbing
git-svn-id: http://biopieces.googlecode.com/svn/trunk@981
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 14 Jun 2010 13:57:21 +0000 (13:57 +0000)]
fixed unit tests for biopieces.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@980
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 28 May 2010 15:11:44 +0000 (15:11 +0000)]
trouble with list of list and class Cast
git-svn-id: http://biopieces.googlecode.com/svn/trunk@979
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 28 May 2010 14:07:11 +0000 (14:07 +0000)]
splitting class Biopieces
git-svn-id: http://biopieces.googlecode.com/svn/trunk@978
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 28 May 2010 13:49:25 +0000 (13:49 +0000)]
splitting class Biopieces
git-svn-id: http://biopieces.googlecode.com/svn/trunk@977
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 28 May 2010 10:43:23 +0000 (10:43 +0000)]
updating ruby code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@976
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 28 May 2010 08:49:13 +0000 (08:49 +0000)]
cleaned up ruby dir
git-svn-id: http://biopieces.googlecode.com/svn/trunk@975
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 27 May 2010 15:33:44 +0000 (15:33 +0000)]
ruby unit tests refactored
git-svn-id: http://biopieces.googlecode.com/svn/trunk@974
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 27 May 2010 10:09:40 +0000 (10:09 +0000)]
updated biopieces code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@973
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 25 May 2010 11:15:29 +0000 (11:15 +0000)]
added plot_scores fix
git-svn-id: http://biopieces.googlecode.com/svn/trunk@969
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 25 May 2010 10:07:32 +0000 (10:07 +0000)]
added plot_scores
git-svn-id: http://biopieces.googlecode.com/svn/trunk@968
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 May 2010 10:15:21 +0000 (10:15 +0000)]
fixed missing SEQ_LEN in read_454
git-svn-id: http://biopieces.googlecode.com/svn/trunk@967
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 May 2010 10:02:22 +0000 (10:02 +0000)]
added solexa_str_mean to read_454
git-svn-id: http://biopieces.googlecode.com/svn/trunk@964
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 May 2010 09:31:05 +0000 (09:31 +0000)]
added bp_scripts directory and stats scripts
git-svn-id: http://biopieces.googlecode.com/svn/trunk@963
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 19 May 2010 07:01:33 +0000 (07:01 +0000)]
added read_454 and write_454 (and ruby stuff)
git-svn-id: http://biopieces.googlecode.com/svn/trunk@961
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 18 May 2010 14:46:41 +0000 (14:46 +0000)]
extract seq now also extract SCORES if present
git-svn-id: http://biopieces.googlecode.com/svn/trunk@958
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 18 May 2010 09:47:36 +0000 (09:47 +0000)]
fixed harmless bug in remove_adaptor
git-svn-id: http://biopieces.googlecode.com/svn/trunk@957
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 14 May 2010 13:09:25 +0000 (13:09 +0000)]
cleaning up ruby code dir
git-svn-id: http://biopieces.googlecode.com/svn/trunk@952
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 11 May 2010 07:48:16 +0000 (07:48 +0000)]
fixed bug in write_fixedstep
git-svn-id: http://biopieces.googlecode.com/svn/trunk@951
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 27 Apr 2010 06:46:10 +0000 (06:46 +0000)]
fixed speed issue with track_ruler in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@950
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 26 Apr 2010 11:37:59 +0000 (11:37 +0000)]
optimized track_ruler in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@949
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 20 Apr 2010 15:21:55 +0000 (15:21 +0000)]
added trimming of scores to remove_adaptor
git-svn-id: http://biopieces.googlecode.com/svn/trunk@947
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 6 Apr 2010 06:41:18 +0000 (06:41 +0000)]
fixing undef $clade bug in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@946
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 31 Mar 2010 07:48:19 +0000 (07:48 +0000)]
dna page session export bug in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@945
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 30 Mar 2010 18:56:06 +0000 (18:56 +0000)]
fixed 0 defined bug in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@944
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 22 Mar 2010 08:28:47 +0000 (08:28 +0000)]
ugly fix of BGB ladder problem
git-svn-id: http://biopieces.googlecode.com/svn/trunk@938
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 22 Mar 2010 08:11:37 +0000 (08:11 +0000)]
fixing ladder bug in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@937
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 19 Mar 2010 16:15:25 +0000 (16:15 +0000)]
added PDF/SVG export to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@935
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 19 Mar 2010 08:48:07 +0000 (08:48 +0000)]
added grid to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@934
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 18 Mar 2010 15:11:41 +0000 (15:11 +0000)]
added collapsable tracks to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@933
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 18 Mar 2010 10:55:51 +0000 (10:55 +0000)]
BGB cleanup
git-svn-id: http://biopieces.googlecode.com/svn/trunk@932
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 18 Mar 2010 09:59:00 +0000 (09:59 +0000)]
error handling and seq guess fix
git-svn-id: http://biopieces.googlecode.com/svn/trunk@931
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 17 Mar 2010 12:03:11 +0000 (12:03 +0000)]
removed indexing from BGB_upload
git-svn-id: http://biopieces.googlecode.com/svn/trunk@917
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 15 Mar 2010 19:33:02 +0000 (19:33 +0000)]
added N block switch to blat_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@905
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 14 Mar 2010 17:54:34 +0000 (17:54 +0000)]
fixed minor BGB bug
git-svn-id: http://biopieces.googlecode.com/svn/trunk@902
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 14 Mar 2010 12:39:42 +0000 (12:39 +0000)]
fixed BGB issues terrible
git-svn-id: http://biopieces.googlecode.com/svn/trunk@901
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 14 Mar 2010 11:22:12 +0000 (11:22 +0000)]
added persistent sessions to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@900
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 13 Mar 2010 18:38:15 +0000 (18:38 +0000)]
fixed login issue in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@899
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 13 Mar 2010 17:13:48 +0000 (17:13 +0000)]
changed BGB session format to JSON
git-svn-id: http://biopieces.googlecode.com/svn/trunk@898
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 13 Mar 2010 13:45:48 +0000 (13:45 +0000)]
added static link to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@897
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 8 Mar 2010 16:00:51 +0000 (16:00 +0000)]
tweaks to blat_seq to avoid introns in fastMap - still going nowhere
git-svn-id: http://biopieces.googlecode.com/svn/trunk@896
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 5 Mar 2010 13:22:49 +0000 (13:22 +0000)]
layout of wiggle improved
git-svn-id: http://biopieces.googlecode.com/svn/trunk@895
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 5 Mar 2010 11:10:55 +0000 (11:10 +0000)]
wiggle tracks display - almost there
git-svn-id: http://biopieces.googlecode.com/svn/trunk@894
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 5 Mar 2010 10:22:45 +0000 (10:22 +0000)]
fixing wiggle tracks in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@893
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 4 Mar 2010 19:56:03 +0000 (19:56 +0000)]
reworked list_inflate/deflate
git-svn-id: http://biopieces.googlecode.com/svn/trunk@892
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 4 Mar 2010 10:08:56 +0000 (10:08 +0000)]
chasing wiggle bug
git-svn-id: http://biopieces.googlecode.com/svn/trunk@891
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 3 Mar 2010 12:31:51 +0000 (12:31 +0000)]
fixed bug in list_deflate
git-svn-id: http://biopieces.googlecode.com/svn/trunk@890
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 3 Mar 2010 10:18:46 +0000 (10:18 +0000)]
fixed empty Q_ID val in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@888
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 3 Mar 2010 07:57:08 +0000 (07:57 +0000)]
added find_gaps
git-svn-id: http://biopieces.googlecode.com/svn/trunk@887
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 2 Mar 2010 19:09:11 +0000 (19:09 +0000)]
fixed bug in Seq.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@886
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 2 Mar 2010 17:18:46 +0000 (17:18 +0000)]
cleaned up BGB track code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@885
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 2 Mar 2010 16:44:56 +0000 (16:44 +0000)]
merged BGB::Common.pm to BGB::Track.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@884
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 2 Mar 2010 11:55:31 +0000 (11:55 +0000)]
BGB cleanup of index.cgi
git-svn-id: http://biopieces.googlecode.com/svn/trunk@882
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 2 Mar 2010 11:35:32 +0000 (11:35 +0000)]
BGB cleanup of hrefs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@881
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 1 Mar 2010 14:58:51 +0000 (14:58 +0000)]
added center navigation to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@880
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 1 Mar 2010 11:30:33 +0000 (11:30 +0000)]
added wiggle to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@879
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 1 Mar 2010 11:27:28 +0000 (11:27 +0000)]
added wiggle to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@878
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Feb 2010 16:51:56 +0000 (16:51 +0000)]
fixed issue in KISS.pm but more found
git-svn-id: http://biopieces.googlecode.com/svn/trunk@876
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Feb 2010 16:35:57 +0000 (16:35 +0000)]
added option for database search to blat_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@875
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 10 Feb 2010 15:54:39 +0000 (15:54 +0000)]
fixed feature width issue
git-svn-id: http://biopieces.googlecode.com/svn/trunk@873
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 10 Feb 2010 15:24:49 +0000 (15:24 +0000)]
added arrows to BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@872
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 9 Feb 2010 17:29:06 +0000 (17:29 +0000)]
added color routine to Draw.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@871
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 9 Feb 2010 16:19:48 +0000 (16:19 +0000)]
moving back to binned index and using JSON for storing
git-svn-id: http://biopieces.googlecode.com/svn/trunk@870
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 9 Feb 2010 14:04:16 +0000 (14:04 +0000)]
changed kiss score to bit_score instead of eval
git-svn-id: http://biopieces.googlecode.com/svn/trunk@869
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 18:07:30 +0000 (18:07 +0000)]
added search function to NClist.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@867
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 18:06:21 +0000 (18:06 +0000)]
fixed BGB search function
git-svn-id: http://biopieces.googlecode.com/svn/trunk@866
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 17:50:02 +0000 (17:50 +0000)]
debugging search function in NClists.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@865
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 17:35:31 +0000 (17:35 +0000)]
added search function to NClist.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@864
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 16:17:10 +0000 (16:17 +0000)]
removed dir check from create_bowtie_index
git-svn-id: http://biopieces.googlecode.com/svn/trunk@863
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 16:15:30 +0000 (16:15 +0000)]
shifted to NC list in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@862
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 11:35:39 +0000 (11:35 +0000)]
added uniq_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@859
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 6 Feb 2010 11:34:35 +0000 (11:34 +0000)]
fix of read_kiss code comments
git-svn-id: http://biopieces.googlecode.com/svn/trunk@858
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 5 Feb 2010 12:55:30 +0000 (12:55 +0000)]
fixed bugs in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@857
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 3 Feb 2010 12:36:54 +0000 (12:36 +0000)]
added NClist.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@856
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 31 Jan 2010 10:07:15 +0000 (10:07 +0000)]
fixed sequence type guessing in create_blast_index
git-svn-id: http://biopieces.googlecode.com/svn/trunk@855
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 29 Jan 2010 09:17:30 +0000 (09:17 +0000)]
changed sorting in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@854
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Jan 2010 08:35:50 +0000 (08:35 +0000)]
repair on plot_karyogram
git-svn-id: http://biopieces.googlecode.com/svn/trunk@852
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Jan 2010 07:56:21 +0000 (07:56 +0000)]
repair on plot_karyogram
git-svn-id: http://biopieces.googlecode.com/svn/trunk@851
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 26 Jan 2010 16:07:06 +0000 (16:07 +0000)]
fixed a number of issues - grave bug in complement_seq!
git-svn-id: http://biopieces.googlecode.com/svn/trunk@850
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 25 Jan 2010 20:50:44 +0000 (20:50 +0000)]
add q_id specificity to assemblo_contigs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@848
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 25 Jan 2010 20:14:05 +0000 (20:14 +0000)]
added strand specificity fo assemble_contigs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@847
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 24 Jan 2010 16:54:44 +0000 (16:54 +0000)]
cleanup BGB stuff
git-svn-id: http://biopieces.googlecode.com/svn/trunk@845
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 22 Jan 2010 10:11:09 +0000 (10:11 +0000)]
fixed URI::Escape on q_id in BGB
git-svn-id: http://biopieces.googlecode.com/svn/trunk@843
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 21 Jan 2010 09:11:56 +0000 (09:11 +0000)]
added plot_lines
git-svn-id: http://biopieces.googlecode.com/svn/trunk@839
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 19 Jan 2010 08:45:44 +0000 (08:45 +0000)]
changed uclust engine from CD-hit to uclust
git-svn-id: http://biopieces.googlecode.com/svn/trunk@837
74ccb610-7750-0410-82ae-
013aeee3265d
projects / biopieces.git / log