added plot_scores fix

git-svn-id: http://biopieces.googlecode.com/svn/trunk@969 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/plot_scores b/bp_bin/plot_scores
index bfd9584acc305af4962c32c88bc46c8357cb15f8..bfe87ccacd6fba8da2f24436665ca4d7382d4b75 100755 (executable)
--- a/bp_bin/plot_scores
+++ b/bp_bin/plot_scores
@@ -46,6 +46,7 @@ $formats   = "solexa,phred,decimal";
 $options = Maasha::Biopieces::parse_options(
     [
         { long => 'no_stream',  short => 'x', type => 'flag',   mandatory => 'no',  default => undef,    allowed => undef,      disallowed => undef },
+        { long => 'data_out',   short => 'o', type => 'file',   mandatory => 'no',  default => undef,    allowed => undef,      disallowed => undef },
         { long => 'format'  ,   short => 'f', type => 'string', mandatory => 'no',  default => "solexa", allowed => $formats,   disallowed => undef },
         { long => 'terminal',   short => 't', type => 'string', mandatory => 'no',  default => 'dumb',   allowed => $terminals, disallowed => undef },
         { long => 'title',      short => 'T', type => 'string', mandatory => 'no',  default => $default, allowed => undef,      disallowed => undef },