]> git.donarmstrong.com Git - biopieces.git/history - code_ruby
projects / biopieces.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
adding bzip2 support in ruby
[biopieces.git] / code_ruby /
2013-09-25 martinahansenadding bzip2 support in ruby tree | commitdiff
2013-09-18 martinahansenbeautifing ambiguity.rb tree | commitdiff
2013-09-18 martinahansenimplemented hamming_dist in inline C tree | commitdiff
2013-09-18 martinahansenadd comments to ambiguity.rb tree | commitdiff
2013-09-18 martinahansenfixed broken tests not workin with Ruby2 tree | commitdiff
2013-09-18 martinahansenadded amiguity.rb tree | commitdiff
2013-09-18 martinahansenadded mem.rb tree | commitdiff
2013-09-18 martinahansenadded ambiguity to hamming_distance tree | commitdiff
2013-09-09 martinahansenfixing usearch upgrade tree | commitdiff
2013-09-06 martinahansenupgraded uclust_seq to support usearch7 tree | commitdiff
2013-06-24 martinahansenfixed genbank and embl parsing of 5'UTR and 3'UTR tree | commitdiff
2013-06-24 martinahansenadded \r remove hack to genbank/embl parsers tree | commitdiff
2013-06-23 martinahansenmoved inline C code to seperate file tree | commitdiff
2013-06-21 martinahansenadded edit_distance method to seq.rb tree | commitdiff
2013-06-21 martinahansenfixed ambiguity in levenshtein.rb tree | commitdiff
2013-06-20 martinahansenadded levenshtein edit distance calculator tree | commitdiff
2013-06-20 martinahansenadded levenshtein edit distance calculator tree | commitdiff
2013-06-20 martinahansenadded levenshtein edit distance calculator tree | commitdiff
2013-06-04 martinahansenadded missing files tree | commitdiff
2013-06-04 martinahansenrevamped find_homopolymers tree | commitdiff
2013-04-29 martinahansenfixed missing BP_TMP dir feature tree | commitdiff
2013-03-16 martinahansenchanged upper/lower case output in assemble_pairs tree | commitdiff
2013-03-13 martinahansenfixed minor upcase bug in assemble.rb tree | commitdiff
2013-03-13 martinahansenadded comments to code tree | commitdiff
2013-03-13 martinahansenupgraded assemble.rb to chose proper residue when mismatch tree | commitdiff
2013-03-13 martinahansenadded hacky thing to avoid warning from zlib tree | commitdiff
2013-03-12 martinahansenadded seq/assemble.rb tree | commitdiff
2013-03-12 martinahansenfixed score base bug in sff.rb tree | commitdiff
2013-03-11 martinahansenadded [] og []= to seq.rb tree | commitdiff
2013-03-08 martinahansenadded split_pair_seq biopiece tree | commitdiff
2013-03-08 martinahansenadded new Biopiece merge_pair_seq tree | commitdiff
2013-03-08 martinahansenadded eof? method to filesys.rb tree | commitdiff
2013-03-08 martinahansenrefactoring of ruby code converting sequences types... tree | commitdiff
2013-03-08 martinahansenadded << method to Seq.rb tree | commitdiff
2013-03-08 martinahansenrewrite of FASTQ internals tree | commitdiff
2013-02-28 martinahansenfinished refactoring s/has_key?/[]/ tree | commitdiff
2013-02-28 martinahansenrefactoring of revcomp in seq.rb tree | commitdiff
2013-02-28 martinahansenadded Seq.shuffle method and tests tree | commitdiff
2013-02-25 martinahansenfixed SCORE_BASE global var tree | commitdiff
2013-02-19 martinahansenadded provisional write sam support tree | commitdiff
2013-02-08 martinahansenfixed quality score validity check tree | commitdiff
2013-02-04 martinahansenadded qual_valid? method to Seq.rb tree | commitdiff
2013-02-02 martinahansenfixed minor bug in error handling tree | commitdiff
2013-01-16 martinahansenfixed bad tests in match.rb tree | commitdiff
2013-01-03 martinahansenpolished pairwise alignment code tree | commitdiff
2013-01-02 martinahansenadded new match.rb and tests tree | commitdiff
2013-01-02 martinahansenadded new match.rb and tests tree | commitdiff
2013-01-02 martinahansenadded test for align dir tree | commitdiff
2013-01-02 martinahansenrenaming match.rb to matches.rb tree | commitdiff
2013-01-02 martinahansenmoved mum.rb tree | commitdiff
2012-12-20 martinahansenclearnup of pair align code tree | commitdiff
2012-12-11 martinahansenadded unit test to backtrack code tree | commitdiff
2012-12-10 martinahansenfixed bug in backtrack.rb tree | commitdiff
2012-12-10 martinahansenfixed unit tests for backtrack.rb tree | commitdiff
2012-12-06 martinahansenfixed unit tests tree | commitdiff
2012-12-05 martinahansenrenamed patternmatcher to dynamic tree | commitdiff
2012-12-05 martinahansenrenamed patternmatcher to dynamic tree | commitdiff
2012-12-05 martinahansenfixing name space collision tree | commitdiff
2012-12-05 martinahansenrefactorying PatternMatcher to Dynamic tree | commitdiff
2012-12-05 martinahansenrenamed patternmatcher to dynamic tree | commitdiff
2012-12-05 martinahansencleaned comments tree | commitdiff
2012-12-05 martinahansenrefactor match->patmatch scan->patscan tree | commitdiff
2012-12-05 martinahansenrefactor match->patmatch scan->patscan tree | commitdiff
2012-12-04 martinahansenadded patmatch method to backtrack.rb tree | commitdiff
2012-12-04 martinahansenadded private to patternmatcher tree | commitdiff
2012-12-04 martinahansenfixed unit tests for patternmatcher tree | commitdiff
2012-12-04 martinahansenadded some text tree | commitdiff
2012-12-03 martinahansenfixed constants for align.rb tree | commitdiff
2012-12-03 martinahansenported patternmatcher to C tree | commitdiff
2012-11-30 martinahansenfinished backtrack drama tree | commitdiff
2012-11-30 martinahansenadded state to backtrack.rb tree | commitdiff
2012-11-30 martinahansendone revert of test_backtrack.rb tree | commitdiff
2012-11-30 martinahansenreverted test_backtrack.rb to r1827 tree | commitdiff
2012-11-30 martinahansenreverted backtrack.rb to 2006 prior to struct version tree | commitdiff
2012-11-29 martinahansendisabling backtrack which causes compile error tree | commitdiff
2012-11-28 martinahansenfixing up backtrack code tree | commitdiff
2012-11-28 martinahansenadded output of mis ind and del to backtrack code tree | commitdiff
2012-11-27 martinahansenpolished backtrack.rb tree | commitdiff
2012-11-27 martinahansenbacktrack.rb polish tree | commitdiff
2012-11-21 martinahansenadded exception handling for missing SFF coordinates tree | commitdiff
2012-11-20 martinahansenadded uchime to usearch tree | commitdiff
2012-11-01 martinahansenadded get_entry method to biopieces.rb tree | commitdiff
2012-10-10 martinahansenadded some file locking to biopieces.rb tree | commitdiff
2012-10-10 martinahansenadded dynamic mem allocation to findsim.rb tree | commitdiff
2012-10-10 martinahansenadded dynamic mem allocation to findsim.rb tree | commitdiff
2012-10-09 martinahansencleanup of findsim.rb tree | commitdiff
2012-10-09 martinahansencleanup of findsim.rb tree | commitdiff
2012-09-27 martinahansenfinishing work on match.rb tree | commitdiff
2012-09-21 martinahansenadded parser for phred qual to fasta.rb tree | commitdiff
2012-09-21 martinahansenadded qual_base(33|64)? methods to seq.rb tree | commitdiff
2012-09-13 martinahansenpair.rb now working correctly tree | commitdiff
2012-09-12 martinahansenworked on pair aligner tree | commitdiff
2012-09-11 martinahansenworking on pair.rb tree | commitdiff
2012-09-11 martinahansenadded align/match.rb tree | commitdiff
2012-09-11 martinahansenworked on pair.rb tree | commitdiff
2012-09-10 martinahansenfixed unit tests for seq.rb tree | commitdiff
2012-09-04 martinahansenadded math_aux.rb tree | commitdiff
2012-09-04 martinahansenadded test_math_aux.rb tree | commitdiff
2012-08-16 martinahansendid something to findsim.rb tree | commitdiff
2012-08-07 martinahansenlast fix on prodigal upgrade tree | commitdiff
next
Mirror (and my branches) of biopieces http://www.biopieces.org/