fixed align.rb up a bit

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1863 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/code_ruby/lib/maasha/align.rb b/code_ruby/lib/maasha/align.rb
index 139c4a2458aadc71520215ad691af94335414ba4..b31154619fc991b4cc7123324e2723be3c349a0d 100755 (executable)
--- a/code_ruby/lib/maasha/align.rb
+++ b/code_ruby/lib/maasha/align.rb
@@ -132,7 +132,7 @@ class Align
   
   # Class method to create a pairwise alignment of two given Seq objects. The
   # alignment is created by casting a search space the size of the sequences
-  # and save the longest perfect match between the sequences and recurse into
+  # and save the best scoring match between the sequences and recurse into
   # the left and right search spaced around this match. When all search spaces
   # are exhausted the saved matches are used to insert gaps in the sequences.
   def self.pair(q_entry, s_entry)