made --rev defacto in useach_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1673 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/usearch_seq b/bp_bin/usearch_seq
index 5cac9497b637fc95a1d9c4e6fd7d8e68fe9da2ba..9bd3d46469b5fb9aacd910356a4e6335c0d83464 100755 (executable)
--- a/bp_bin/usearch_seq
+++ b/bp_bin/usearch_seq
@@ -82,7 +82,7 @@ class Usearch
        # The command is composed of bits from the @command variable.
        def execute
                @command.unshift "nice -n 19"
-    @command << "--rev" if @options[:comp]
+    @command << "--rev"
                @command << "> /dev/null 2>&1" unless @options[:verbose]
                command = @command.join(" ")
     system(command)
@@ -94,7 +94,6 @@ end
 
 casts = []
 casts << {:long=>'database', :short=>'d', :type=>'file!', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'comp',     :short=>'c', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
 casts << {:long=>'identity', :short=>'i', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
 casts << {:long=>'e_val',    :short=>'e', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}