fixed typo

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1885 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/assemble_seq_idba_ud b/bp_bin/assemble_seq_idba_ud
index 888fc1aeb33bce26caf664a1dada6344bc25645f..e600c0392143a9d8fe4df10ac72df00aa0f8f3aa 100755 (executable)
--- a/bp_bin/assemble_seq_idba_ud
+++ b/bp_bin/assemble_seq_idba_ud
@@ -73,7 +73,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
                commands << "--min_count #{options[:count_min]}"
                commands << "--min_pairs #{options[:pairs_min]}"
                commands << "--prefix #{options[:prefix_len]}"
-               commands << "--num_treads #{options[:cpus]}"
+               commands << "--num_threads #{options[:cpus]}"
                commands << "> /dev/null 2>&1" unless options[:verbose]
 
                command = commands.join(" ")

diff --git a/bp_bin/find_genes b/bp_bin/find_genes
index a1257c9a696c8b637fcde96de57e58df195a7969..15e7f5703a74703a30f193cfcb5495beaa80d86f 100755 (executable)
--- a/bp_bin/find_genes
+++ b/bp_bin/find_genes
@@ -59,10 +59,6 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   prodigal.run
 
   prodigal.each do |record|
-    record[:DEFINITION].match /seqhdr="([^"]+)/ do |m| 
-      record[:S_ID] = $1
-    end
-
     output.puts record
   end
 end