bp_usage/invert_align

   1 Author:         Martin Asser Hansen - Copyright (C) - All rights reserved
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   3 Contact:        mail@maasha.dk
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   5 Date:           August 2007
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   7 License:        GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
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   9 Description:    Inverts an alignment showing only non-mathing residues using the first sequence as reference.
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  11 Usage:          ... | $script [options]
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  13 Options:        [-s          | --soft]               -  Use soft inversion instead of hard inversion.
  14 Options:        [-I <file>   | --stream_in=<file>]   -  Read input from stream file  -  Default=STDIN
  15 Options:        [-O <file>   | --stream_out=<file>]  -  Write output to stream file  -  Default=STDOUT
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  17 Examples:       ... | $script     -  Invert alignment in stream.
  18 Examples:       ... | $script -s  -  Soft invert alignment in stream.
  19