1 # ==========================
2 # BamTools CMakeLists.txt
3 # (c) 2010 Derek Barnett
6 # ==========================
9 include_directories( ${BamTools_SOURCE_DIR}/src )
11 # add compiler definitions
12 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
13 add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
15 # list of all BamTools API source (.cpp) files
16 set( BamToolsAPISources
25 SamReadGroupDictionary.cpp
27 SamSequenceDictionary.cpp
28 internal/BamDeviceFactory_p.cpp
29 internal/BamException_p.cpp
30 internal/BamFile_p.cpp
32 internal/BamHeader_p.cpp
33 internal/BamHttp_p.cpp
34 internal/BamIndexFactory_p.cpp
35 internal/BamMultiReader_p.cpp
36 internal/BamPipe_p.cpp
37 internal/BamRandomAccessController_p.cpp
38 internal/BamReader_p.cpp
39 internal/BamStandardIndex_p.cpp
40 internal/BamToolsIndex_p.cpp
41 internal/BamWriter_p.cpp
42 internal/BgzfStream_p.cpp
43 internal/ILocalIODevice_p.cpp
44 internal/IRemoteIODevice_p.cpp
45 internal/SamFormatParser_p.cpp
46 internal/SamFormatPrinter_p.cpp
47 internal/SamHeaderValidator_p.cpp
50 # create main BamTools API shared library
51 add_library( BamTools SHARED ${BamToolsAPISources} )
52 set_target_properties( BamTools PROPERTIES
54 OUTPUT_NAME "bamtools" )
55 target_link_libraries( BamTools z )
56 install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin" )
58 # create main BamTools API static library
59 add_library( BamTools-static STATIC ${BamToolsAPISources} )
60 set_target_properties( BamTools-static PROPERTIES
61 OUTPUT_NAME "bamtools"
63 target_link_libraries( BamTools-static z )
64 install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools" )
67 include( ../ExportHeader.cmake )
68 set( ApiIncludeDir "api" )
69 ExportHeader( APIHeaders api_global.h ${ApiIncludeDir} )
70 ExportHeader( APIHeaders BamAlgorithms.h ${ApiIncludeDir} )
71 ExportHeader( APIHeaders BamAlignment.h ${ApiIncludeDir} )
72 ExportHeader( APIHeaders BamAux.h ${ApiIncludeDir} )
73 ExportHeader( APIHeaders BamConstants.h ${ApiIncludeDir} )
74 ExportHeader( APIHeaders BamIndex.h ${ApiIncludeDir} )
75 ExportHeader( APIHeaders BamMultiReader.h ${ApiIncludeDir} )
76 ExportHeader( APIHeaders BamReader.h ${ApiIncludeDir} )
77 ExportHeader( APIHeaders BamWriter.h ${ApiIncludeDir} )
78 ExportHeader( APIHeaders IBamIODevice.h ${ApiIncludeDir} )
79 ExportHeader( APIHeaders SamConstants.h ${ApiIncludeDir} )
80 ExportHeader( APIHeaders SamHeader.h ${ApiIncludeDir} )
81 ExportHeader( APIHeaders SamProgram.h ${ApiIncludeDir} )
82 ExportHeader( APIHeaders SamProgramChain.h ${ApiIncludeDir} )
83 ExportHeader( APIHeaders SamReadGroup.h ${ApiIncludeDir} )
84 ExportHeader( APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir} )
85 ExportHeader( APIHeaders SamSequence.h ${ApiIncludeDir} )
86 ExportHeader( APIHeaders SamSequenceDictionary.h ${ApiIncludeDir} )
88 set( AlgorithmsIncludeDir "api/algorithms" )
89 ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )