# ==========================
# BamTools CMakeLists.txt
# (c) 2010 Derek Barnett
#
# src/api/
# ==========================

# list include paths
include_directories( ${BamTools_SOURCE_DIR}/src )

# add compiler definitions 
add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)

# list of all BamTools API source (.cpp) files
set( BamToolsAPISources
        BamAlignment.cpp
        BamMultiReader.cpp
        BamReader.cpp
        BamWriter.cpp
        SamHeader.cpp
        SamProgram.cpp
        SamProgramChain.cpp
        SamReadGroup.cpp
        SamReadGroupDictionary.cpp
        SamSequence.cpp
        SamSequenceDictionary.cpp
        internal/BamDeviceFactory_p.cpp
        internal/BamException_p.cpp
        internal/BamFile_p.cpp
        internal/BamFtp_p.cpp
        internal/BamHeader_p.cpp
        internal/BamHttp_p.cpp
        internal/BamIndexFactory_p.cpp
        internal/BamMultiReader_p.cpp
        internal/BamPipe_p.cpp
        internal/BamRandomAccessController_p.cpp
        internal/BamReader_p.cpp
        internal/BamStandardIndex_p.cpp
        internal/BamToolsIndex_p.cpp
        internal/BamWriter_p.cpp
        internal/BgzfStream_p.cpp
        internal/ILocalIODevice_p.cpp
        internal/IRemoteIODevice_p.cpp
        internal/SamFormatParser_p.cpp
        internal/SamFormatPrinter_p.cpp
        internal/SamHeaderValidator_p.cpp
)

# create main BamTools API shared library
add_library( BamTools SHARED ${BamToolsAPISources} )
set_target_properties( BamTools PROPERTIES
                       SOVERSION "2.0.5"
                       OUTPUT_NAME "bamtools" )
target_link_libraries( BamTools z )
install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin" )

# create main BamTools API static library
add_library( BamTools-static STATIC ${BamToolsAPISources} )
set_target_properties( BamTools-static PROPERTIES
                       OUTPUT_NAME "bamtools"
                       PREFIX "lib" )
target_link_libraries( BamTools-static z )
install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools" )

# export API headers
include( ../ExportHeader.cmake )
set( ApiIncludeDir "api" )
ExportHeader( APIHeaders api_global.h             ${ApiIncludeDir} )
ExportHeader( APIHeaders BamAlgorithms.h          ${ApiIncludeDir} )
ExportHeader( APIHeaders BamAlignment.h           ${ApiIncludeDir} )
ExportHeader( APIHeaders BamAux.h                 ${ApiIncludeDir} )
ExportHeader( APIHeaders BamConstants.h           ${ApiIncludeDir} )
ExportHeader( APIHeaders BamIndex.h               ${ApiIncludeDir} )
ExportHeader( APIHeaders BamMultiReader.h         ${ApiIncludeDir} )
ExportHeader( APIHeaders BamReader.h              ${ApiIncludeDir} )
ExportHeader( APIHeaders BamWriter.h              ${ApiIncludeDir} )
ExportHeader( APIHeaders IBamIODevice.h           ${ApiIncludeDir} )
ExportHeader( APIHeaders SamConstants.h           ${ApiIncludeDir} )
ExportHeader( APIHeaders SamHeader.h              ${ApiIncludeDir} )
ExportHeader( APIHeaders SamProgram.h             ${ApiIncludeDir} )
ExportHeader( APIHeaders SamProgramChain.h        ${ApiIncludeDir} )
ExportHeader( APIHeaders SamReadGroup.h           ${ApiIncludeDir} )
ExportHeader( APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir} )
ExportHeader( APIHeaders SamSequence.h            ${ApiIncludeDir} )
ExportHeader( APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir} )

set( AlgorithmsIncludeDir "api/algorithms" )
ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )