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final version for ape 2.6-1
2010-11-01 paradisfinal version for ape 2.6-1
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2010-10-20 paradisnew speciesTree()
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2010-10-19 paradisa few changes and one bug fix
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2010-10-07 paradiscorrecting a bug in write.tree + error in MPR examples
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2010-10-07 paradisa few changes....
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2010-09-27 paradisadding bd.time
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2010-09-16 paradismany changes!
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2010-07-21 paradisimprovements to compar.gee + bug fix in extract.clade
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2010-07-19 paradisBOTHlabels(... hozir = TRUE)
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2010-07-13 paradisnew as.list.DNAbin
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2010-06-14 paradissmall changes in PGLS.R
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2010-05-27 paradisnew mixedFontLabel() + bug fix in rTraitCont.c
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2010-05-25 paradisnew operators for "multiPhylo" + fixed small bug in...
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2010-05-17 paradisvarious changes to DNAbin functions + new labels.DNAbin()
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2010-05-17 paradisremoving NPRS + change bind.tree.Rd to avoid crash...
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2010-05-06 paradis2nd try!!
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2010-04-24 paradisnew faster nj.c
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2010-04-07 paradisremoving evolve.phylo + bug fix in as.phylo.hclust
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2010-04-02 paradisvarious corrections
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2010-03-19 paradisfixing various bugs + news in cophyloplot
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2010-03-16 paradisfixes in compar.ou and plot.phylo + new bind.tree
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2010-03-13 paradisadding stree.Rd
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2010-03-13 paradisfew corrections and fixes
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2010-02-03 paradisfix rTraitDisc
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2010-02-01 paradisfinal packaging for ape 2.5!
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2010-01-26 paradisupdating ChangeLog file
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2010-01-25 paradisdata for lmorigin
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2010-01-25 paradisadding lmorigin + final correction to dist.topo
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2010-01-23 paradisnew dist.topo (to be finished) and modified multi2di
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2010-01-22 paradisnew code from Pierre Legendre
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2010-01-15 paradisadd delta.plot + clarify doc in write.tree.Rd
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2010-01-12 paradisnew files for trait simulations
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2010-01-04 paradisvarious changes...
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2009-12-16 paradissmall changed in add.scale.bar
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2009-11-21 paradislast changes for ape 2.4-1
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2009-11-10 paradisremoving plot.phylo.coor (definitely)
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2009-11-10 paradisagain...........
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2009-11-03 paradischanged rtree and rcoal
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2009-10-28 paradissome bug fixes
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2009-10-05 paradisfinal changes for ape 2.4 including removing mlphylo!
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2009-10-02 paradisvarious changes and fixes
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2009-09-30 paradisfinal plot.phylo and change to BOTHlabels() from Janet...
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2009-09-24 paradisfinally the new plot.phylo...
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2009-09-18 paradisremoving files that have moved to pegas
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2009-09-18 paradismoved functions from ape to pegas -> ape 2.4
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2009-09-16 paradisbug fix in seg.sites + new option in base.freq
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2009-09-14 paradistypo fixing...
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2009-09-09 paradisa collection of bug fixes
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2009-07-27 paradisfixing write.nexus()
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2009-07-27 paradisfixing zoom()
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2009-07-23 paradisfixing add.scale.bar()
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2009-07-20 paradisfaster nj()!!!
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2009-07-14 paradisfixing nj() with many 0 distances
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2009-07-07 paradisseveral bug fixes while in JKT
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2009-06-23 paradisfixes for ape 2.3-1
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2009-06-23 paradisfix a bug in drop.tip + add new option 'rooted'
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2009-06-19 paradisnew is.monophyletic() + various changes/fixes
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2009-06-12 paradisremoved klastorin()
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2009-06-10 paradisimproved ace()
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2009-06-09 paradisfixed null model in yule.cov + various things
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2009-05-19 paradisnew c.DNAbin()
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2009-05-14 paradisfaster rcoal... at last!
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2009-05-12 paradismany changes.......
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2009-04-27 paradisfixed a small bug in read.tree
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2009-04-01 paradisfix on dist.gene + a few man pages corrections
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2009-03-30 paradisvarious changes for ape 2.3
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2009-03-27 paradisadded edge.lty to plot.phylo
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2009-03-23 paradisadding contribs by Daniel Lawson
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2009-03-23 paradischange nlm to nlminb in ace() + new makeNodeLabel ...
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2009-03-10 paradisvarious fixes + del xenarthra
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2009-03-04 paradiscorrecting bug in drop.tip
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2009-02-20 paradisadded the contribution of PL on CDAM
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2009-02-20 paradisnew yule.time + several corrections in man pages
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2009-01-20 paradisfix to avoid uncessary warning in ace(method = "GLS")
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2009-01-19 paradisbug fix in read.nexus + new ?ape man page
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2009-01-13 paradiscorrecting errors in Rd files
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2009-01-12 paradisupdates for ape 2.2-3
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2009-01-08 paradisvarious updates + adding SPR+TBR in fastme.bal()
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2008-12-20 paradisbug fixed in ltt.plot.R
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2008-11-24 paradisfix bug in read.nexus()
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2008-11-04 paradisfixing bug in chronopl(, CV = TRUE)
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2008-10-09 paradisimproved cbind.DNAbin for ape 2.2-2
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2008-10-08 paradisupdated phymltest() for PhyML 3.0 + changed rbind.DNAbin()
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2008-10-02 paradisbug corrected in del.gaps + small change in man page...
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2008-09-25 paradiscorrecting ref in mcmc.popsize.Rd (from Gramlitz)
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2008-09-18 paradisfix a few bugs + correct some the man page of sh.test()
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2008-07-28 paradischanged some data sets (made lighter) + clarified man...
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2008-07-21 paradisadding tree_build.c
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2008-07-18 paradiscorrecting 2 bugs in new dist.gene()
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2008-07-18 paradisfixed prop.part()
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2008-07-18 paradisnew dist.gene() + corrected mlphylo()
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2008-07-11 paradisfixed sh.test() for ape 2.2-1
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2008-07-11 paradisfinal fix in read.nexus() for ape 2.2-1
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2008-07-09 paradisbug fix in read.nexus()
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2008-07-08 paradisvarious corrections
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2008-07-03 paradisnew makeLabel() + modifs in read.dna() & write.dna()
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2008-06-28 paradischanged check.labels = TRUE in dist.topo() and consensus()
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2008-06-24 paradisbug fix in read.nexus()
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2008-06-19 paradisbug fix in collapsed.singles()
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2008-06-18 paradisbugs fixing in mlphylo()
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Local fork of ape (analysis of ecology)