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2011-03-21	paradis	some big fixes for ape 2.7-1	blob \| commitdiff \| raw
2011-03-17	paradis	final packing for ape 2.7	blob \| commitdiff \| raw \| diff to current
2011-03-16	paradis	new image.DNAbin()	blob \| commitdiff \| raw \| diff to current
2011-03-02	paradis	fixes in bind.tree()	blob \| commitdiff \| raw \| diff to current
2011-03-01	paradis	bug fixing in read.nexus() + Others....	blob \| commitdiff \| raw \| diff to current
2011-02-17	paradis	bug fixes in plot.phylo	blob \| commitdiff \| raw \| diff to current
2011-02-11	paradis	a few bug fixes especially in plot.phylo()	blob \| commitdiff \| raw \| diff to current
2011-02-01	paradis	bug fix in read.dna + change the default of tol in...	blob \| commitdiff \| raw \| diff to current
2010-12-24	paradis	some bug fixes and '...' in rTrait*()	blob \| commitdiff \| raw \| diff to current
2010-12-14	paradis	several fixes	blob \| commitdiff \| raw \| diff to current
2010-12-07	paradis	bug fix in write.tree()	blob \| commitdiff \| raw \| diff to current
2010-11-30	paradis	fix a bug in as.hclust.phylo + a few typos in man pages	blob \| commitdiff \| raw \| diff to current
2010-11-24	paradis	various bug fixes	blob \| commitdiff \| raw \| diff to current
2010-11-18	paradis	bug fix in mcmc.popsize()	blob \| commitdiff \| raw \| diff to current
2010-11-15	paradis	new pic.ortho() and varCompPhylip() + fix in dist.nodes()	blob \| commitdiff \| raw \| diff to current
2010-11-04	paradis	a bunch of modifications and fixes	blob \| commitdiff \| raw \| diff to current
2010-11-01	paradis	final version for ape 2.6-1	blob \| commitdiff \| raw \| diff to current
2010-10-20	paradis	new speciesTree()	blob \| commitdiff \| raw \| diff to current
2010-10-19	paradis	a few changes and one bug fix	blob \| commitdiff \| raw \| diff to current
2010-10-07	paradis	a few changes....	blob \| commitdiff \| raw \| diff to current
2010-09-27	paradis	adding bd.time	blob \| commitdiff \| raw \| diff to current
2010-09-16	paradis	many changes!	blob \| commitdiff \| raw \| diff to current
2010-07-13	paradis	new as.list.DNAbin	blob \| commitdiff \| raw \| diff to current
2010-05-27	paradis	new mixedFontLabel() + bug fix in rTraitCont.c	blob \| commitdiff \| raw \| diff to current
2010-05-25	paradis	new operators for "multiPhylo" + fixed small bug in...	blob \| commitdiff \| raw \| diff to current
2010-05-17	paradis	various changes to DNAbin functions + new labels.DNAbin()	blob \| commitdiff \| raw \| diff to current
2010-05-17	paradis	removing NPRS + change bind.tree.Rd to avoid crash...	blob \| commitdiff \| raw \| diff to current
2010-05-06	paradis	2nd try!!	blob \| commitdiff \| raw \| diff to current
2010-04-24	paradis	new faster nj.c	blob \| commitdiff \| raw \| diff to current
2010-04-07	paradis	removing evolve.phylo + bug fix in as.phylo.hclust	blob \| commitdiff \| raw \| diff to current
2010-04-02	paradis	various corrections	blob \| commitdiff \| raw \| diff to current
2010-03-19	paradis	fixing various bugs + news in cophyloplot	blob \| commitdiff \| raw \| diff to current
2010-03-16	paradis	fixes in compar.ou and plot.phylo + new bind.tree	blob \| commitdiff \| raw \| diff to current
2010-03-13	paradis	few corrections and fixes	blob \| commitdiff \| raw \| diff to current
2010-02-03	paradis	fix rTraitDisc	blob \| commitdiff \| raw \| diff to current
2010-02-01	paradis	final packaging for ape 2.5!	blob \| commitdiff \| raw \| diff to current
2010-01-22	paradis	new code from Pierre Legendre	blob \| commitdiff \| raw \| diff to current
2010-01-15	paradis	add delta.plot + clarify doc in write.tree.Rd	blob \| commitdiff \| raw \| diff to current
2010-01-12	paradis	new files for trait simulations	blob \| commitdiff \| raw \| diff to current
2009-12-16	paradis	small changed in add.scale.bar	blob \| commitdiff \| raw \| diff to current
2009-11-21	paradis	last changes for ape 2.4-1	blob \| commitdiff \| raw \| diff to current
2009-11-10	paradis	again...........	blob \| commitdiff \| raw \| diff to current
2009-11-03	paradis	changed rtree and rcoal	blob \| commitdiff \| raw \| diff to current
2009-10-28	paradis	some bug fixes	blob \| commitdiff \| raw \| diff to current
2009-10-05	paradis	final changes for ape 2.4 including removing mlphylo!	blob \| commitdiff \| raw \| diff to current
2009-09-30	paradis	final plot.phylo and change to BOTHlabels() from Janet...	blob \| commitdiff \| raw \| diff to current
2009-09-24	paradis	finally the new plot.phylo...	blob \| commitdiff \| raw \| diff to current
2009-09-18	paradis	moved functions from ape to pegas -> ape 2.4	blob \| commitdiff \| raw \| diff to current
2009-09-16	paradis	bug fix in seg.sites + new option in base.freq	blob \| commitdiff \| raw \| diff to current
2009-09-09	paradis	a collection of bug fixes	blob \| commitdiff \| raw \| diff to current
2009-07-27	paradis	fixing zoom()	blob \| commitdiff \| raw \| diff to current
2009-07-23	paradis	fixing add.scale.bar()	blob \| commitdiff \| raw \| diff to current
2009-07-20	paradis	faster nj()!!!	blob \| commitdiff \| raw \| diff to current
2009-07-14	paradis	fixing nj() with many 0 distances	blob \| commitdiff \| raw \| diff to current
2009-07-07	paradis	several bug fixes while in JKT	blob \| commitdiff \| raw \| diff to current
2009-06-23	paradis	fix a bug in drop.tip + add new option 'rooted'	blob \| commitdiff \| raw \| diff to current
2009-06-19	paradis	new is.monophyletic() + various changes/fixes	blob \| commitdiff \| raw \| diff to current
2009-06-12	paradis	removed klastorin()	blob \| commitdiff \| raw \| diff to current
2009-06-10	paradis	improved ace()	blob \| commitdiff \| raw \| diff to current
2009-06-09	paradis	fixed null model in yule.cov + various things	blob \| commitdiff \| raw \| diff to current
2009-05-19	paradis	new c.DNAbin()	blob \| commitdiff \| raw \| diff to current
2009-05-14	paradis	faster rcoal... at last!	blob \| commitdiff \| raw \| diff to current
2009-05-12	paradis	many changes.......	blob \| commitdiff \| raw \| diff to current
2009-04-27	paradis	fixed a small bug in read.tree	blob \| commitdiff \| raw \| diff to current
2009-04-01	paradis	fix on dist.gene + a few man pages corrections	blob \| commitdiff \| raw \| diff to current
2009-03-30	paradis	various changes for ape 2.3	blob \| commitdiff \| raw \| diff to current
2009-03-27	paradis	added edge.lty to plot.phylo	blob \| commitdiff \| raw \| diff to current
2009-03-23	paradis	adding contribs by Daniel Lawson	blob \| commitdiff \| raw \| diff to current
2009-03-23	paradis	change nlm to nlminb in ace() + new makeNodeLabel ...	blob \| commitdiff \| raw \| diff to current
2009-03-10	paradis	various fixes + del xenarthra	blob \| commitdiff \| raw \| diff to current
2009-03-04	paradis	correcting bug in drop.tip	blob \| commitdiff \| raw \| diff to current
2009-02-20	paradis	added the contribution of PL on CDAM	blob \| commitdiff \| raw \| diff to current
2009-02-20	paradis	new yule.time + several corrections in man pages	blob \| commitdiff \| raw \| diff to current
2009-01-19	paradis	bug fix in read.nexus + new ?ape man page	blob \| commitdiff \| raw \| diff to current
2009-01-12	paradis	updates for ape 2.2-3	blob \| commitdiff \| raw \| diff to current
2009-01-08	paradis	various updates + adding SPR+TBR in fastme.bal()	blob \| commitdiff \| raw \| diff to current
2008-12-20	paradis	bug fixed in ltt.plot.R	blob \| commitdiff \| raw \| diff to current
2008-11-24	paradis	fix bug in read.nexus()	blob \| commitdiff \| raw \| diff to current
2008-11-04	paradis	fixing bug in chronopl(, CV = TRUE)	blob \| commitdiff \| raw \| diff to current
2008-10-08	paradis	updated phymltest() for PhyML 3.0 + changed rbind.DNAbin()	blob \| commitdiff \| raw \| diff to current
2008-10-02	paradis	bug corrected in del.gaps + small change in man page...	blob \| commitdiff \| raw \| diff to current
2008-09-18	paradis	fix a few bugs + correct some the man page of sh.test()	blob \| commitdiff \| raw \| diff to current
2008-07-28	paradis	changed some data sets (made lighter) + clarified man...	blob \| commitdiff \| raw \| diff to current
2008-07-18	paradis	new dist.gene() + corrected mlphylo()	blob \| commitdiff \| raw \| diff to current
2008-07-11	paradis	fixed sh.test() for ape 2.2-1	blob \| commitdiff \| raw \| diff to current
2008-07-09	paradis	bug fix in read.nexus()	blob \| commitdiff \| raw \| diff to current
2008-07-03	paradis	new makeLabel() + modifs in read.dna() & write.dna()	blob \| commitdiff \| raw \| diff to current
2008-06-28	paradis	changed check.labels = TRUE in dist.topo() and consensus()	blob \| commitdiff \| raw \| diff to current
2008-06-24	paradis	bug fix in read.nexus()	blob \| commitdiff \| raw \| diff to current
2008-06-19	paradis	bug fix in collapsed.singles()	blob \| commitdiff \| raw \| diff to current
2008-06-18	paradis	bugs fixing in mlphylo()	blob \| commitdiff \| raw \| diff to current
2008-06-12	paradis	bug fix in root()	blob \| commitdiff \| raw \| diff to current
2008-06-09	paradis	improved unique.multiPhylo()	blob \| commitdiff \| raw \| diff to current
2008-06-08	paradis	adding del.gaps()	blob \| commitdiff \| raw \| diff to current
2008-05-08	paradis	final wrap of ape 2.2	blob \| commitdiff \| raw \| diff to current
2008-05-06	paradis	cosmetic modif on rtree() + last (?) changes to Damien...	blob \| commitdiff \| raw \| diff to current
2008-04-24	paradis	fix bug in seg.sites + improved Damien's man pages	blob \| commitdiff \| raw \| diff to current
2008-04-18	paradis	added corPagel + gave version # 2.2	blob \| commitdiff \| raw \| diff to current
2008-04-17	paradis	new files by Damien + a few bug fixes	blob \| commitdiff \| raw \| diff to current
2008-03-31	paradis	improved chronopl	blob \| commitdiff \| raw \| diff to current
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